Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0199 ATGGCTGCTACAGCTTCTGTTTCCACTGTAATTTCCAACAGAATCTACAACCTCTCATTCACCCACTCTCCAATTTCACTCCCCACAAACTTCACTATAAGACCCATATTCCACAAACCCCTTAATCTGATTCTAAACTCTCAAAGTTTCAACCTTTATCCTCTATCACTTCATAGTCTTCACCCTCCTTTTGCTTCTGCATTTGATGGAGTTGAAGTGACCCAAAATATCATCACTGAAGGGAACCAAGAAGATGAACCAGAACCAGAGAACTTTGAGAAACCACAAGATAAGGAAGAGGATAAGGTGTCAGATTCAAATAATACTGGGAGGCTCTATGTGGGAAATTTGCCATATTCATTGACTTCTGACCAATTGGCTGAACTTTTTGGAGAAGCTGGCACTGTGGCCTCTGTTGAGATTGTGTATGATCGTGTCACAGACAGAAGCAGAGGATTTGGATTTGTTACAATGAGTAGTGTTGAGGAAGCTAAAGAAGCAATTCAAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGTCAAGGTAAACTTCCCAGAAGTGCCCAGAGGAGGTGAAAGGATAGTGATGGGGCCGAAATTACGGAATAACTACAGAGGCTTCATTGACAGCCCTCACAAAATCTATGCTGGAAACCTTGGTTGGACACTGACTTCAGAAGGACTTAAAGATGCTTTTGATCAGCAGCCAGGCATATTGAGTGCCAAGGTCATCTATGAAAGGGACTCTGGAAGATCTCGGGGTTTTGGGTTTGTCACTTTTGAAACTGCTGACGATGCAGATGCTGCTTTAGAGGCCATGAACGGCGTGGAAGTTCAAGGTAGGGCCTTACGATTGAATTTGGCAGCAATGCGGGCACCTTCATCTCCTCCATCGGTTGAGGAAAATACAGAAAGTTATGCTGATAGCTCGGAATTGGTATCTAGTGCCAGCACATGA 960 0.4375 MAATASVSTVISNRIYNLSFTHSPISLPTNFTIRPIFHKPLNLILNSQSFNLYPLSLHSLHPPFASAFDGVEVTQNIITEGNQEDEPEPENFEKPQDKEEDKVSDSNNTGRLYVGNLPYSLTSDQLAELFGEAGTVASVEIVYDRVTDRSRGFGFVTMSSVEEAKEAIQMFDGSQVGGRTVKVNFPEVPRGGERIVMGPKLRNNYRGFIDSPHKIYAGNLGWTLTSEGLKDAFDQQPGILSAKVIYERDSGRSRGFGFVTFETADDADAALEAMNGVEVQGRALRLNLAAMRAPSSPPSVEENTESYADSSELVSSAST 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0199 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Lal20g0199 319 MobiDBLite consensus disorder prediction 79 109 - -
Lal20g0199 319 MobiDBLite consensus disorder prediction 292 319 - -
Lal20g0199 319 SUPERFAMILY RNA-binding domain, RBD 110 291 IPR035979 GO:0003676
Lal20g0199 319 MobiDBLite consensus disorder prediction 297 319 - -
Lal20g0199 319 PANTHER OS02G0815200 PROTEIN 3 301 - -
Lal20g0199 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Lal20g0199 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 285 IPR000504 GO:0003723
Lal20g0199 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Lal20g0199 319 Gene3D - 197 298 IPR012677 -
Lal20g0199 319 SMART rrm2_1 214 287 IPR003954 GO:0003676
Lal20g0199 319 SMART rrm2_1 111 184 IPR003954 GO:0003676
Lal20g0199 319 MobiDBLite consensus disorder prediction 88 106 - -
Lal20g0199 319 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 3 301 - -
Lal20g0199 319 SMART rrm1_1 214 287 IPR000504 GO:0003723
Lal20g0199 319 SMART rrm1_1 111 184 IPR000504 GO:0003723
Lal20g0199 319 CDD RRM_HP0827_like 111 187 - -
Lal20g0199 319 Gene3D - 74 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0199 Lal-Chr20 1404655 1410175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0199 105 289 Eukaryotic Initiation Factors Gene Family AT3G16380 34.392 6.68e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0199 - - aprc:113861916 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0199 20 1404655 1410175 Lal20g0199 20 1404655 1410175 ECH