Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0197 ATGAACTTGAGCGATGAAATTGATGTTCCACCATTCTTTCTATGCCCTATCTCATTAGAAATCATGAAGGATCCAGTGACTATCTCCACTGGCATCACCTACGACCGAGATAACATAGAAAAATGGGTTTTCTCTGGAAAAAACAAGACATGTCCTTTAACCAAACAACCCATTTCAGATTTCGTTGATCTCACTCCAAACCACACCCTTCGAAGACTTATTCAAGCTTGGTGTACCATGAATGCTTCTCATGGCATAGAAAGAATTCCAACACCAAAACCTCCTATCAACAAAATCCAAATCACAAAGCTACTTAATGATGCTTATCATTCACCTCATTTTCTGAATAAATCTCTCAAACAACTTAAATCCATTGCTTCCGGTAGCGAAACGAATAAACGTTGCATGGAAGCTGCTGGTGCTGTTGAATTCTTAGCATCAGTAATAAAAGGCAACACCCATAACAATGATTCTGCAACAAGTGTTGAAGATGAAGCTTTAAGTATACTTCATGATCTTCATGTATCAGAAACTGGATTGAAGACTCTACTGGGATTCAAAAACGGCGAGTTCATTGAGTCCTTAACAAGGGTCATGCAAAATGGTATCTATGAGTCAAGAGTTTATGCAGTGTTCTTGTTGAAATCAATGTCTGAAGTGGCTGAACCCGTGCACTTGTTCCATTTAAGAACCGAGTTGTTAATGGAGTTAGTACATGTATTACAAGATCAGATTTCACAGAAGGCTTCAAAGGCAACACTTCAGACACTAATACAAGTGTGTCCTTGGGGTAGGAACAGGACCAAAGCAGTGGAAGCAGGTGCTGTTTCAGTTCTAATAGAGCTTCTACTTGATTGCAAGGACAGAAAGCCTTGTGAGATGATGCTTGTGTTGTTAGAGTCTCTGTGCCAGTGTGCTGATGGAAGGGCTGAACTTTTGAGCCATGGAGCAGGACTAGCCATTGTATCCAAAAAGATTCTGAGGGTTTCAATCTTGGCAAATGATAGGGCTGTGAGGATTTTATTGTTTGTTTCTAGATTCTCTGCAACTCCTGGTGTTGTTCAAGAAATGTTGAAACTTGGTGTAGTGGCAAAACTTTGTTTGATACTTCAAGTGGATAGTGGAAACAAGGTCAAAGAGATAGCAAGGGAGATACTCAAACTACATGCTAGGGTATGGAGGGATTCTTCTTGCATACCTAGTAGTTTGCTTTCTTCATACCCACCTTATGTGTAA 1236 0.4005 MNLSDEIDVPPFFLCPISLEIMKDPVTISTGITYDRDNIEKWVFSGKNKTCPLTKQPISDFVDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPINKIQITKLLNDAYHSPHFLNKSLKQLKSIASGSETNKRCMEAAGAVEFLASVIKGNTHNNDSATSVEDEALSILHDLHVSETGLKTLLGFKNGEFIESLTRVMQNGIYESRVYAVFLLKSMSEVAEPVHLFHLRTELLMELVHVLQDQISQKASKATLQTLIQVCPWGRNRTKAVEAGAVSVLIELLLDCKDRKPCEMMLVLLESLCQCADGRAELLSHGAGLAIVSKKILRVSILANDRAVRILLFVSRFSATPGVVQEMLKLGVVAKLCLILQVDSGNKVKEIAREILKLHARVWRDSSCIPSSLLSSYPPYV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0197 411 SUPERFAMILY ARM repeat 102 385 IPR016024 -
Lal20g0197 411 CDD RING-Ubox_PUB 13 56 IPR045210 -
Lal20g0197 411 PANTHER WDSAM1 PROTEIN 5 408 IPR045185 GO:0061630
Lal20g0197 411 SMART Ubox_2 12 77 IPR003613 GO:0004842|GO:0016567
Lal20g0197 411 ProSiteProfiles U-box domain profile. 8 84 IPR003613 GO:0004842|GO:0016567
Lal20g0197 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 5 408 - -
Lal20g0197 411 Gene3D - 99 401 IPR011989 -
Lal20g0197 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Lal20g0197 411 SUPERFAMILY RING/U-box 6 85 - -
Lal20g0197 411 Pfam U-box domain 9 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0197 Lal-Chr20 1384533 1385768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0197 3 408 U-box Gene Family AT2G35930 58.293 7.60e-175 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0197 - - gmx:100811258 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0197 20 1384533 1385768 Lal20g0197 20 1384533 1385768 ECH
Lal11g1281 11 16481539 16482774 Lal20g0197 20 1384533 1385768 LSH
Lal1g1731 1 19746318 19747308 Lal20g0197 20 1384533 1385768 LSH
Lal20g0197 20 1384533 1385768 Lal13g1323 13 12156037 12157272 PCT
Lal13g1322 13 12124422 12125678 Lal20g0197 20 1384533 1385768 PCT