Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0196 ATGGCGACATATTATCATGGTAATTCGGAAATACAAGGTGGTAGTGCTGATGGACTTCAAACACTCGTGCTCATGAATCCTGGTTATATCCACTACCCTGACGCGCCGTCACAACCACCTCTTTCTCATGCTCCCAGCAACCTTGTTTTCCTCAACAATAATAGTGGCAACAACAACAACAACTTCAACCCTCACGCGCCGCAATCTCATCACACCCAACATTTTGTCGGCGTCCCTCTCTCCTCCGCCGCTGCCGCCTCACAAGACCTTAACCACCACCACTCCATGCACCCCCACCATGATGTGTCAGCCTTGCATGGCTTCATGCCCCGCATGCAGTACAATCTCTGGAACACAGTTGACCCTAACTTGTCGGCGCGTGATAATCCACGCTCCCAGCAGGGGCTCTCATTGACTCTTTCTTCCCAGCAAGCTGGGTTCGGGTCTTTCCTGGTTGACCGTGAGGTGCAGCACCAGGTACATCCGCCGGCTATGTCGGGCGACGATCTAGGCGGTAGCTCACCCTCACCGGCTTCCGTGGTCACCAATGGTGGCGCTTCAGGCATTCAGAGTGTGGTTCTGAGCTCAAAGTATTTGAAGGCGGCGCATGAGCTGTTGGATGAGGTGGTGAATGTGAACAATGGGATTAATACTGAATTGGCAAAGAAAAGTGGTGGTGGTGGTGGTGGAGGAAGCAAGGTGATTGGGGAGTCATCTGGTGGTGCAGCTAGTGGAGACGGTGGTTCAATTGGTGGAGAGGGTAGTGGGAAGCGTAGTTCTAACCTATCAACTGCTGAAAGACAAGAAATTCAGATGAAGAAGGCTAAGCTAATAAGCATGCTTGATGAGGTGGAGGGAAGGTACAGGCAATACCATCACCAAATGGAAATTGTGGTATCATCATTTGAACAAGTTGCAGGGATTGGATCAGCAAGAACTTACACTTCCCTTGCATTGCAAACAATATCAAAGCAGTTTCGGTGTTTGAAAGATGCTATAACAGGTCAAATTCATGTTGCAAATAAGAGCTTAGGAGAAGAAGAATGTTTTGGAGGTAAAAATGAAGGATCTAGGCTCAAATATGTAGACCATCATTTGAGGCAACAGAGAGCTCTACAACAATTGGGTCTGATCCAACACAATGCTTGGAGACCACAGAGAGGTTTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTTCTCCATCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACGGGACTTACAAGGAGCCAGGTGTCAAATTGGTTTATAAATGCTCGAGTTAGGCTTTGGAAGCCAATGGTGGAAGAAATGTACATGGAGGAGATGAAAGAGAATGAACAGAATAATGGTTCTGAGGACAAATCAAGCAAAAACAATGAAGACCCTTCTATGAAAAATAATGCCTCAAATGATAAAGGTACTGCCACTGAAACTGAACTTAAAAGCTTCAATCCCAAGCAACAAGTTTCGAAGAGTCAGAACACTCCAATAGTTGGTGAAAGTGTGAGAAACCAATCAGGATTCAGCTTCAATATTGGGTCATCAGAACTAGATGGTATCACACAAGGAAGTCCCAAAAAACCAAGGAATCATGAAGTTATGCATTCAACAAATAGTGTTCTTTCAATGAACATGGATATCAAACCCAATGAACAAGTCTCAATGAAATTTGGTGATGATGAGAGGCAGGGTAGAGATGAATACTCTTTTATGGGAAACCAAACAAACTTTATTGGTGGTTTTGGACAATACCCTATTGGTGATATTGGTAGATTTGATGCAGAACAATTCACACCAAGGTTTCAAGGTAATGGTGTTTCACTTACACTTGGTCTTGATTCATTACCAGGAACACATCAAAATTTTATTCCAAACCAAAACATTCAACTTGGTAGAAGCATGGATATGAGTGAAACAAATGAGTTTGGTGCTATAAACACTTCTTCACCTTCTCACTCTTCAGCTGCATTTGAGAATATCAACATGCAAAACCCAAAGAGGTTTGCAGCACAATTGTTGCCAGATTTTGTGGCCCAGATAAGACATTGA 2082 0.4419 MATYYHGNSEIQGGSADGLQTLVLMNPGYIHYPDAPSQPPLSHAPSNLVFLNNNSGNNNNNFNPHAPQSHHTQHFVGVPLSSAAAASQDLNHHHSMHPHHDVSALHGFMPRMQYNLWNTVDPNLSARDNPRSQQGLSLTLSSQQAGFGSFLVDREVQHQVHPPAMSGDDLGGSSPSPASVVTNGGASGIQSVVLSSKYLKAAHELLDEVVNVNNGINTELAKKSGGGGGGGSKVIGESSGGAASGDGGSIGGEGSGKRSSNLSTAERQEIQMKKAKLISMLDEVEGRYRQYHHQMEIVVSSFEQVAGIGSARTYTSLALQTISKQFRCLKDAITGQIHVANKSLGEEECFGGKNEGSRLKYVDHHLRQQRALQQLGLIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKENEQNNGSEDKSSKNNEDPSMKNNASNDKGTATETELKSFNPKQQVSKSQNTPIVGESVRNQSGFSFNIGSSELDGITQGSPKKPRNHEVMHSTNSVLSMNMDIKPNEQVSMKFGDDERQGRDEYSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFQGNGVSLTLGLDSLPGTHQNFIPNQNIQLGRSMDMSETNEFGAINTSSPSHSSAAFENINMQNPKRFAAQLLPDFVAQIRH 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0196 693 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 639 - -
Lal20g0196 693 MobiDBLite consensus disorder prediction 453 471 - -
Lal20g0196 693 Pfam Associated with HOX 192 334 IPR006563 -
Lal20g0196 693 ProSiteProfiles 'Homeobox' domain profile. 380 443 IPR001356 GO:0003677
Lal20g0196 693 MobiDBLite consensus disorder prediction 453 543 - -
Lal20g0196 693 SUPERFAMILY Homeodomain-like 384 450 IPR009057 -
Lal20g0196 693 SMART HOX_1 383 447 IPR001356 GO:0003677
Lal20g0196 693 Gene3D - 386 465 - -
Lal20g0196 693 MobiDBLite consensus disorder prediction 472 532 - -
Lal20g0196 693 MobiDBLite consensus disorder prediction 220 266 - -
Lal20g0196 693 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 639 - -
Lal20g0196 693 SMART prehox3 187 335 IPR006563 -
Lal20g0196 693 CDD homeodomain 383 443 IPR001356 GO:0003677
Lal20g0196 693 Pfam Homeobox KN domain 400 439 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0196 Lal-Chr20 1373857 1379264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0196 1 689 Homeobox Transcription Factor Family AT2G35940 50.614 6.74e-172 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal20g0196 POX 5.7e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0196 - - lang:109348289 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0196 20 1373857 1379264 Lal20g0196 20 1373857 1379264 ECH
Lal11g1280 11 16465886 16472383 Lal20g0196 20 1373857 1379264 LSH