Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0194 ATGAACCCTCTCACTCATCCACCGTGCCCCACCCTCTTCCTCTTTCTCCTCCTCCTCCTCCTCCCTCACCATTCCCTCACCGCCACCGACCCAAACGACGTCGCAATCCTTCTCCAATTCAAGAAAACCCTAAAAAACCCAGAACTCCTCTCATGGCCTGAGACCGATAACCCTGACCCATGTGGTCCTCCACAGTGGAAATACATTTTCTGCGTTGGTAACAGAGTTTCTCAGATTCAAGCTAAAAACTTGAACCTCACTGGTCCATTACCCCAAAATTTTAACCAACTCACTTATCTCAGTAACTTGGGTCTTCAGAACAATCGCCTCAATGGTCCTCTTCCTACTTTTCGTGGCTTATCTAATCTCGAAAAGGCTTTTTTGAATTACAACGATTTCGATTCAATCCCTTCTGATTTCTTCGAAGGGTTAATTAATATGAGGGAATTTGCATTGGATTATAACAACCTTAATGCTAGTAGTGGTGGATGGAATTTCCCTCCTTCGTTGGAGAATGCAACCCAGTTGAAGAAACTATCATGTATGAATTGCAATTTGGTGGGTCCAATGCCTGATTTTCTTGGAAAGTTTATATCTTTAACGGATTTGAAGCTTTCCTTGAATGATTTGATAGGAGAGATTCCTGGGAGTTTAAATGGCACAAGTTTGCAGATTCTGTGGTTGAATAATCAGAAGGGTAGTGGTCTCAGTGGGGGTCTTGATGTTGTGACCACTATGGTTTCTCTTCAAAGTTTGTGGCTTCATGGGAACAAGTTCACTGGGTCAATTCCTGAGAGAGTTGGGGAATTGGTTTCTTTGAAGGATCTCAACCTCAATGGGAATCAACTTGTTGGGTTGATCCCTGATGCTTTAGGTAATTTGCAATTGGATAATCTTGATTTGAACAATAATCACTTCATGGGTCCGATCCCAAACTTTAAAGCAGCTAAAGTCACTTATGATTTTAATGGTTTTTGTCAAACTAAGCCTGGGGTTCCATGCTCCTTTGAGGTTATGGCACTGTTGAGCTTTTTATCTGAGTTGAATTATCCTTCAAATCTGGTTAATTCATGGACCGGTGATGACCCGTGTAAGGGGGAATGGTTTGGGATTAATTGCAATGCAAATGGAAAGGTGTCTATGATTAATTTGCCTAATATGAAATATAATGGTACTTTGAGTCCATCGGTTGCGAATTTAGGTTCTCTTGTTGAAATCAGATTGGGGGGTAATAATGTCAGTGGTTTAGTGCCCAGTAATTGGACTAGCTTGACATCACTGAAATTGTTGGATCTGAGAAACAATAACATTTCCCCACCCCTGCCTAAGTTTAGTAATGCTGGCTTGGAATTCATAACTGTTGGGAATTCTCTGTTGAATGTGAACTCGGAGGCCCCTTCACCGGGGAGCAAAAGCCCTTCATTGGGGAGCAAAAGTCCTTCATCTGGATCTGGAAATGCTGAATCATCACCAAAGTCAACACCAACAGACTCGAACTCTAATTCTAGTGATTCTCGTGAAACCAAAAACTCCAAAAGGAAAGTGTTGGTTTCAATTGTGGCTCCGATTGTGGGTGTGATGGCTGCAGCTTTTGTGCTCATTCCCCTCTATGCATATTGTTTCAGGAGGAGAAAGGATACCTTCAAGGCTCCAAGCTCACTAGTCATTCACCCTAGAGATCCATCTGATTCAGACAGTGCGGTGAAAATTGCCATTGCTAATAATAACAATGGAAGCATTTCCACTGTAACGGGAAGTGGCTCCGGGACTATAGACAGCAGTGGATCTGGGAGTTCTCATACCATTGAAGCTGGAAATCTCGTGATATCGATTCAAGTCCTACGAAATGTGACCAAGAATTTTGCCCCCGAGAATGAGCTTGGCCGTGGTGGATTTGGGGTTGTATATAAGGGAGAGTTGGATGATGGGACTAAAATTGCTGTGAAACGAATGGAATCTGGTGTGATAAGTAACAAAGCCTTAGATGAATTCCAGGCTGAAATTGCAGTTCTATCCAAAGTCCGGCACCGACATCTAGTGTCCCTTTTAGGTTATTCTGTTGCAGGAAATGAGAGACTTCTGGTTTATGAGTATATGCCACAAGGGGCTCTCAGTCAGCATCTTTTCCATTGGAAGAGTTTAAAACTGGAGCCTCTTTCTTGGAAAAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATACGCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGTCATCAAATATTTTGCTTGCTGATGATTTTAAAGCAAAAGTCTCAGATTTTGGATTGGTAAAACTTGCTCCTGATGGAGAAAAATCTGTAGTGACCAGACTTGCTGGAACTTTTGGATACTTGGCACCAGAATATGCAGTCACAGGAAAAATCACTACCAAAGCAGATGTTTTTAGTTTTGGCGTTGTGCTAATGGAGTTGTTGACTGGTTTGATGGCACTTGATGATGATAGACCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCGGATAAGGAGAAACTATTGGCTGCTATTGACCCAGCCCTTGACAGAAAGGAAGAAGCGTTTGAGACCGTCTCCATCATTGCCGAGCTAGCTGGACACTGCACTGCCAGAGAACCAGGTCAGCGGCCAGATATGGGTCATGCCGTGAACGTTCTGGCACCGCTGGTTGAAAAATGGAAACCATTTGATGATGACACCGAGGAGTATTCCGGCATCGATTATAGTCTTCCCCTTAATCAGATGGTGAAGGGTTGGCAGGAGGCAGAGGGAAAGGACATCAGTTATGTGGACCTTGAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCAGCCGATGGCCGGTAA 2904 0.4335 MNPLTHPPCPTLFLFLLLLLLPHHSLTATDPNDVAILLQFKKTLKNPELLSWPETDNPDPCGPPQWKYIFCVGNRVSQIQAKNLNLTGPLPQNFNQLTYLSNLGLQNNRLNGPLPTFRGLSNLEKAFLNYNDFDSIPSDFFEGLINMREFALDYNNLNASSGGWNFPPSLENATQLKKLSCMNCNLVGPMPDFLGKFISLTDLKLSLNDLIGEIPGSLNGTSLQILWLNNQKGSGLSGGLDVVTTMVSLQSLWLHGNKFTGSIPERVGELVSLKDLNLNGNQLVGLIPDALGNLQLDNLDLNNNHFMGPIPNFKAAKVTYDFNGFCQTKPGVPCSFEVMALLSFLSELNYPSNLVNSWTGDDPCKGEWFGINCNANGKVSMINLPNMKYNGTLSPSVANLGSLVEIRLGGNNVSGLVPSNWTSLTSLKLLDLRNNNISPPLPKFSNAGLEFITVGNSLLNVNSEAPSPGSKSPSLGSKSPSSGSGNAESSPKSTPTDSNSNSSDSRETKNSKRKVLVSIVAPIVGVMAAAFVLIPLYAYCFRRRKDTFKAPSSLVIHPRDPSDSDSAVKIAIANNNNGSISTVTGSGSGTIDSSGSGSSHTIEAGNLVISIQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMESGVISNKALDEFQAEIAVLSKVRHRHLVSLLGYSVAGNERLLVYEYMPQGALSQHLFHWKSLKLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKSSNILLADDFKAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDDDRPEESQYLAAWFWHIKSDKEKLLAAIDPALDRKEEAFETVSIIAELAGHCTAREPGQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDISYVDLEDSKSSIPARPTGFADSFTSADGR 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0194 967 Gene3D Phosphorylase Kinase; domain 1 587 698 - -
Lal20g0194 967 MobiDBLite consensus disorder prediction 946 967 - -
Lal20g0194 967 SMART serkin_6 621 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0194 967 SUPERFAMILY L domain-like 29 313 - -
Lal20g0194 967 PANTHER OSJNBA0070M12.3 PROTEIN 13 967 - -
Lal20g0194 967 Pfam Leucine rich repeat N-terminal domain 338 374 IPR013210 -
Lal20g0194 967 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Lal20g0194 967 ProSitePatterns Protein kinases ATP-binding region signature. 627 649 IPR017441 GO:0005524
Lal20g0194 967 ProSiteProfiles Protein kinase domain profile. 621 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0194 967 MobiDBLite consensus disorder prediction 463 511 - -
Lal20g0194 967 Pfam Protein tyrosine and serine/threonine kinase 624 895 IPR001245 GO:0004672|GO:0006468
Lal20g0194 967 SUPERFAMILY L domain-like 337 443 - -
Lal20g0194 967 CDD STKc_IRAK 627 900 - -
Lal20g0194 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672|GO:0006468
Lal20g0194 967 Gene3D Ribonuclease Inhibitor 336 456 IPR032675 -
Lal20g0194 967 SMART LRR_typ_2 270 293 IPR003591 -
Lal20g0194 967 SMART LRR_typ_2 120 143 IPR003591 -
Lal20g0194 967 SMART LRR_typ_2 246 268 IPR003591 -
Lal20g0194 967 SMART LRR_typ_2 400 423 IPR003591 -
Lal20g0194 967 SMART LRR_typ_2 424 448 IPR003591 -
Lal20g0194 967 Gene3D Ribonuclease Inhibitor 30 331 IPR032675 -
Lal20g0194 967 MobiDBLite consensus disorder prediction 463 505 - -
Lal20g0194 967 SUPERFAMILY Protein kinase-like (PK-like) 598 897 IPR011009 -
Lal20g0194 967 Gene3D Transferase(Phosphotransferase) domain 1 699 917 - -
Lal20g0194 967 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 13 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0194 Lal-Chr20 1334404 1337890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0194 86 902 Receptor kinase-like Gene Family AT5G07280 31.257 1.83e-81 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lal20g0194 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0194 - - gmx:100305366 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0194 20 1334404 1337890 Lal20g0194 20 1334404 1337890 ECH
Lal11g1277 11 16400987 16404919 Lal20g0194 20 1334404 1337890 LSH