Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0186 ATGTCCGGCAGCGCTAGAACTCCGAACCGCCGTGAATATCCACCGCGGGAAGGTTCGACCATACCGAACCGGCCGTCGCTGAAGCGCCACCTCGCCTTCGCATCCACAAAGCCGCCGTTTGCTCCGCCATATGAATATCGAAGTTTCTCTGCTTCTCGACCCTCCGATCAAGAGGCTGAAGCTGTTGTTGTTAGATCACCATACATGAAGATGAAGAATGGACTGAATGTCACTGAAGGAAAGTCAAAGGAGACAAGTCAAACTCCTGGATACAATAATGTAATTAGTAATCCGTTGACAACTCCTATGTCTAAAAAAGGGGGAAGGACGTACAATAAAACGAAGGTTCCAAGGGATGGTAGATTTGGTCCAGTGACACCAAAATCAGAAGCTGGATCCCCTTCTCCTGCTAGCAACTGTCGTTATGACAGTTCCTTAGGTAATTTTGGAAGGAACCTTAACCAAGAAGCTCTTTTACATTTCTCTTTACTGCCTGGTATCACTCTCAGTTCTTTCCATGAAAAAATGATGACAAACTTGTACTGGAACTTCACAGGTCTCTTGACAAAAAAGTTCATCCATTTGCTAAAGCATGCAGAGGGTGGAAATCTTGACCTAAATAATGCAGCAGAAACCTTGGAGGTGCAAAAGAGGAGGATATATGACATTACTAATGTTTTGGAAGGCATTGGTCTAATCGAGAAGAAGATAAAAAACAATATACATTGGAAGGGAGTTGATTGTTCTCCATCCGGTGAGAAAAATGGTGATGTCTCTATGCTGAAGGATGAAGTTGAAAAACTTTCTTTGGAAGAGAACAAACTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAGTTTGAGTGAAGATGAAAACAAAAAGAAGTTTTTTTATGTAACTGAAGATGATATCAAGTCCCTACCTGGCTTCCAGAATGAAACACTAATAGCAATCAAAGCTCCATATGGAACCACTCTGGAAGTCCCTGAACCTGATGAAGCTGTTGACTATCCACAAAGGAGATATAGGGCTATTCTTAGAAGCACAATGGGTCCAATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAGTTTGAAGAGATGAGCTTGCAACATGCTTCAAGTTCAGAGTCCAATGATCGTCTAGCAACAGAAGTCATTCCTGTTGAATGCAGTTATGATGGCCTTCAACCTCAAGCTCAACACTCTTCTCATGCATCTTCTGATATAAACAGTGTACAAGAGTTTGGTGGGGGCATGATGAAAATTGTCCCCTCAGATGCTGATACTGATGCAGATTATTGGCTTCTATCAGATGCTGCACCTAGCATAACAGACATATGGAAAACAGATTTGGACATACTTGATCCTGACTTCGGAATCATGACGCCACAAACTCCATCATCTCAGTTTTCTGAAGCCCCACCTGCGACAGGTAACGCTACTAGCATGTGA 1461 0.4251 MSGSARTPNRREYPPREGSTIPNRPSLKRHLAFASTKPPFAPPYEYRSFSASRPSDQEAEAVVVRSPYMKMKNGLNVTEGKSKETSQTPGYNNVISNPLTTPMSKKGGRTYNKTKVPRDGRFGPVTPKSEAGSPSPASNCRYDSSLGNFGRNLNQEALLHFSLLPGITLSSFHEKMMTNLYWNFTGLLTKKFIHLLKHAEGGNLDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKIKNNIHWKGVDCSPSGEKNGDVSMLKDEVEKLSLEENKLDDQIREMQERLRSLSEDENKKKFFYVTEDDIKSLPGFQNETLIAIKAPYGTTLEVPEPDEAVDYPQRRYRAILRSTMGPIDVYLISQFEEKFEEMSLQHASSSESNDRLATEVIPVECSYDGLQPQAQHSSHASSDINSVQEFGGGMMKIVPSDADTDADYWLLSDAAPSITDIWKTDLDILDPDFGIMTPQTPSSQFSEAPPATGNATSM 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0186 486 MobiDBLite consensus disorder prediction 467 486 - -
Lal20g0186 486 Pfam E2F/DP family winged-helix DNA-binding domain 186 245 IPR003316 GO:0005667|GO:0006355
Lal20g0186 486 Gene3D - 183 248 IPR036388 -
Lal20g0186 486 SUPERFAMILY E2F-DP heterodimerization region 258 362 IPR037241 -
Lal20g0186 486 PANTHER TRANSCRIPTION FACTOR E2FB 181 475 - -
Lal20g0186 486 PANTHER TRANSCRIPTION FACTOR E2FB 25 147 - -
Lal20g0186 486 CDD E2F_DD 261 362 IPR032198 GO:0046983
Lal20g0186 486 SMART E2F_TDP_2 186 245 IPR003316 GO:0005667|GO:0006355
Lal20g0186 486 PANTHER TRANSCRIPTION FACTOR E2F 181 475 IPR015633 GO:0000978|GO:0006357
Lal20g0186 486 PANTHER TRANSCRIPTION FACTOR E2F 25 147 IPR015633 GO:0000978|GO:0006357
Lal20g0186 486 MobiDBLite consensus disorder prediction 79 139 - -
Lal20g0186 486 MobiDBLite consensus disorder prediction 1 60 - -
Lal20g0186 486 Gene3D - 254 362 - -
Lal20g0186 486 MobiDBLite consensus disorder prediction 79 108 - -
Lal20g0186 486 Pfam E2F transcription factor CC-MB domain 261 361 IPR032198 GO:0046983
Lal20g0186 486 Coils Coil 258 292 - -
Lal20g0186 486 SUPERFAMILY "Winged helix" DNA-binding domain 186 246 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0186 Lal-Chr20 1294356 1298850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0186 19 484 E2F-DP Transcription Factor Family AT2G36010 48.207 1.12e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal20g0186 E2F_CC-MB 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0186 K06620 - gmx:100811762 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0186 20 1294356 1298850 Lal20g0186 20 1294356 1298850 ECH