Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0183 ATGGGCAAGAAAATGAAGCTTCCCTCTCTTCTTAACAACTCAGAAGTTAAGTCCTCTTCTTCCTGGTCTTGGCTCTATTGTAATCAACCAAGAACCCTTTCCTTTAGAACCCACAGTTGCATATTCAAAACCATTAACCCAATCTATTTAAATGCCACCATCGACGTGCTTGAAAGTTCTGAATCCTTTTTCACCCTCTCACCTGACTCTAATAGCTTCACAACCACTTCTGAAGAAGCTTCTAGAGGAGTTCATGATTCAACAGAGACCGTGATTCGTGAATCACGCTCTGACCGTTTGTTCTTCCAGCTAGATGAGACTAACTCCATATTAGAAGCCAAAAGTGGAGGTAGGGTTCCATTCAAAGATAGTGTTGCTTTTACCATGGATTCACAAGACCCTTATGTGGATTTTCGAAAGTCAATGGAGGAGATAGTAGAGGCTCATGGTGTGAAGGATTGGGAGAGTCTTGAACAGCTTTTTTGTTGGTATTTGAGAGTCAATGAGAAAAGTAGTCATGGTTATGTTGTTAGTGCTTTCGTTGATTTATTGGTCGGTCTTGAATTTGTTTCAGCTTCTTCATCTTCTTCTTGTTGTTGTTGTAGCACTTCTTGTGTTTCTTCTTTGAAAGCTGAGGAGGTTGATAGTACTACTAGTTCATCTTTGTTGTTCGAACAAGTTAAGGAGGTGATTAATTAA 699 0.3977 MGKKMKLPSLLNNSEVKSSSSWSWLYCNQPRTLSFRTHSCIFKTINPIYLNATIDVLESSESFFTLSPDSNSFTTTSEEASRGVHDSTETVIRESRSDRLFFQLDETNSILEAKSGGRVPFKDSVAFTMDSQDPYVDFRKSMEEIVEAHGVKDWESLEQLFCWYLRVNEKSSHGYVVSAFVDLLVGLEFVSASSSSSCCCCSTSCVSSLKAEEVDSTTSSSLLFEQVKEVIN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0183 232 Pfam Transcriptional repressor, ovate 131 187 IPR006458 -
Lal20g0183 232 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 125 187 IPR006458 -
Lal20g0183 232 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 5 222 IPR038933 GO:0045892
Lal20g0183 232 ProSiteProfiles OVATE domain profile. 127 186 IPR006458 -
Lal20g0183 232 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 5 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0183 Lal-Chr20 1279042 1279740 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal20g0183 Ovate 3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0183 - - jre:108983224 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0183 20 1279042 1279740 Lal12g0475 12 3403456 3404175 ECH
Lal20g0183 20 1279042 1279740 Lal24g0381 24 2752942 2753667 ECH
Lal20g0183 20 1279042 1279740 Lal20g0183 20 1279042 1279740 ECH
Lal11g1259 11 16268751 16269464 Lal20g0183 20 1279042 1279740 LSH
Lal20g0183 20 1279042 1279740 Lal13g1355 13 12772546 12773304 PCT
Lal13g1355 13 12772546 12773304 Lal20g0183 20 1279042 1279740 PCT