Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0181 ATGGGACGAGTGAGAACAAAGACAGTGAAGAAATCATCACGGCAAGTGATAGAACGATACTATTCACGCATGACATTGGATTTCCACACGAACAAGAAGGTTCTAGAAGAAGTAGCTCTTATCCCATCAAAGAGGCTTCGCAACAAGATCGCTGGATTTTCAACCCATCTCATGAAACGTATTCAAAAGGGTCCTGTTCGTGGAATATCACTAAAACTTCAAGAAGAAGAACGTGAACGTCGCATGGATTTTGTTCCTGATGTATCAGCTATTAATATTGATCATATTGAAGTTGATAAAGAAACACTTGATATGCTCACTGCTCTTGGTATTCATGATGTTCCTGGTATTGTTAAGGTTGATCCTGTTCCTGTTAATAACCCACTTGGGTTTGGTCGAGGTGCTCCTAGGAGGTTTTAA 420 0.4024 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAINIDHIEVDKETLDMLTALGIHDVPGIVKVDPVPVNNPLGFGRGAPRRF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0181 139 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lal20g0181 139 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lal20g0181 139 PANTHER 40S RIBOSOMAL PROTEIN S17 1 137 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lal20g0181 139 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Lal20g0181 139 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lal20g0181 139 PANTHER 40S RIBOSOMAL PROTEIN S17 1 137 - -
Lal20g0181 139 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0181 Lal-Chr20 1270431 1270850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0181 1 139 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 80.142 3.88e-78 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0181 K02962 - gmx:100785402 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0181 20 1270431 1270850 Lal20g0181 20 1270431 1270850 ECH