Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0178 ATGTCTTTAAACCATTTCTCATCAGATACAACACAAGCAACAACCACTCTATGGTGGACTCAACAACAAGGAGGTTCAAGGGCACACCCAAAACCCAATAACCCTTTCTTTAACCTTAACAACCAAAACAACAACGATGATGACGTGGAAAACACTCAGCTAGTACCACTCTACGATGATGAAGCCGTCACCATCAACACCGTACAAGAAGAAGAAGAAGAAGAAGAATCGGTTGAGGAAGAAAAAGAAGGGATGTTTGAAAAAGCATTGACACCGAGTGATGTTGGAAAACTGAACCGTCTTGTGATACCGAAACAGCATGCTGAGAAGTACTTTCCACTCGGCGGTGGTGACTCGGTTGAGAGCAAGGGGTTGTTGCTGAGTTTCGAAGACGAGTCAGGGAAGTGTTGGAGGTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTTTTAACCAAAGGGTGGAGCCGTTATGTTAAGGATAAGAGACTCGATGCTGGCGACGTCGTTTTGTTTCAGCGACACCGTGCTCATGCTAACCGACTTTTTATTGGGTGGAGGCGCCGCCATGTCTACGGTGGGTCCACGGTGCCTGTGGCGCATGGTAGCAAAGCTGGGACTAGTGGTGATGGTAATTGTATTAACGATGGTAGTAAGAATGGGAATGGTGGTGTAACTGAAGGGTGGACCAGAGGATTCTATTCTGCGCATCCCTCTTATCCTGCGCTTCATCACCCCTTTGCATATCATCAAGGTGGTGGGTCCCAACAAGGTGAGAAGCAAAAGACAGAAGTGGGTAACAGTTCCAGGGTGTTGAGGTTGTTTGGAGTGAACATGGAATGCCAACCTCAAAATGATTCTGAAACCTTAAGCTCTTATAATATGTCATCAACACAGGGTACAAATACCCATCATTTTTACCACCTTAATAATCAACCTTCTAATTATTCTTCTACTTCCAACACTCCCCATCACATAATACATCAACAACCACACTAG 1002 0.4511 MSLNHFSSDTTQATTTLWWTQQQGGSRAHPKPNNPFFNLNNQNNNDDDVENTQLVPLYDDEAVTINTVQEEEEEEESVEEEKEGMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGGGDSVESKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRAHANRLFIGWRRRHVYGGSTVPVAHGSKAGTSGDGNCINDGSKNGNGGVTEGWTRGFYSAHPSYPALHHPFAYHQGGGSQQGEKQKTEVGNSSRVLRLFGVNMECQPQNDSETLSSYNMSSTQGTNTHHFYHLNNQPSNYSSTSNTPHHIIHQQPH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0178 333 SMART B3_2 86 191 IPR003340 GO:0003677
Lal20g0178 333 ProSiteProfiles B3 DNA-binding domain profile. 86 191 IPR003340 GO:0003677
Lal20g0178 333 Pfam B3 DNA binding domain 86 190 IPR003340 GO:0003677
Lal20g0178 333 Gene3D - 80 194 IPR015300 -
Lal20g0178 333 SUPERFAMILY DNA-binding pseudobarrel domain 85 189 IPR015300 -
Lal20g0178 333 Coils Coil 68 88 - -
Lal20g0178 333 MobiDBLite consensus disorder prediction 284 333 - -
Lal20g0178 333 CDD B3_DNA 85 178 IPR003340 GO:0003677
Lal20g0178 333 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 297 IPR044800 GO:0003700
Lal20g0178 333 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 35 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0178 Lal-Chr20 1244451 1246680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0178 79 283 RAV Transcription Factor Family AT5G06250 51.852 4.04e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal20g0178 B3 1.9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0178 - - aprc:113872948 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0178 20 1244451 1246680 Lal20g0178 20 1244451 1246680 ECH
Lal1g1739 1 19819148 19820457 Lal20g0178 20 1244451 1246680 LSH
Lal20g0178 20 1244451 1246680 Lal13g1364 13 12889574 12891912 PCT