Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0175 ATGGAAAATATGGCACCTGGGTATCGTTTCTACCCTACAGAAGAGGAAATTATTTCATTCTATCTTCATAACAAGCTTGAAGGAGTGAAAGAGGAAATCATGAACAGGGTTATACCAGTCATTGATATATATGCCTACAACCCTTCTCAACTCCCACAAATTTCAGGAGAGGCAAGTATGAGAGACACTGAACAATGGTTCTTTTTCATTCCAAGGCAAGAAAGTGAAGCAAGAGGAGGGAGGCCAAAGAGGCTCACAACTACCGGTTACTGGAAAGCTACCGGCTCTCCTAATCATGTTTATTCTAAAGTTAATCAAATCATTGGAATGAAAAGAACCATGGTTTTCTATAGTGGAAGAGCTCCAAATGGAAGAAAAACTGATTGGAAGATGAATGAGTATAAGGCCATTCATGCTAATGCATCATCATCAAATAAGATTGGTCTTATGCAATTAAGGCATGAATTCAGCTTAAGCCGAGTGTACAAGAAATCAAAGTGCTTAAGGGCATTTGATAGACGACCATCATCACCAAGGAGGGACACATTTAATGTTCAAAATGTGCAAGATCAACATCAAATGGCTTCAACATGTTATGATCATAACACTCCTCAAATGGTATTGGAGACTGAGATCACAGGTGCAACAATAGCAAGATCACCTGATGAGAGTTCCTCCTCTGAAGACCATGGACAACCCTCCCATGCTGGGGAATCTACTCAAATGGAGGTTGATATAAATGAGCCTTTGTTGAATTGGGAGCAAGTGGATTGGTTCTTGGGATCAGAACTATGA 795 0.4013 MENMAPGYRFYPTEEEIISFYLHNKLEGVKEEIMNRVIPVIDIYAYNPSQLPQISGEASMRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSKVNQIIGMKRTMVFYSGRAPNGRKTDWKMNEYKAIHANASSSNKIGLMQLRHEFSLSRVYKKSKCLRAFDRRPSSPRRDTFNVQNVQDQHQMASTCYDHNTPQMVLETEITGATIARSPDESSSSEDHGQPSHAGESTQMEVDINEPLLNWEQVDWFLGSEL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0175 264 MobiDBLite consensus disorder prediction 218 242 - -
Lal20g0175 264 SUPERFAMILY NAC domain 3 164 IPR036093 GO:0003677|GO:0006355
Lal20g0175 264 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 258 - -
Lal20g0175 264 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Lal20g0175 264 ProSiteProfiles NAC domain profile. 4 164 IPR003441 GO:0003677|GO:0006355
Lal20g0175 264 Gene3D NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Lal20g0175 264 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0175 Lal-Chr20 1212980 1214990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0175 7 258 NAC Transcription Factor Family AT5G22380 46.094 5.00e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal20g0175 NAM 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0175 - - lang:109348309 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0175 20 1212980 1214990 Lal20g0175 20 1212980 1214990 ECH