Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0173 ATGGAGGCCTTACATTTTTCAACTGTTGCATCCCGCCATTTCTCCATCTCTCTCTCACACAACCGAACTTTCTCATCTTCTTCTTATTCTACTCACAAACCAACTAAGCTCTCTTCTTCATGGACCGGTTCTTCTTTTTCTTCCTCTAGAAACAACTTGTTCACGAATGAGATATGGGGTTGGGTCAACTCCAAAAGTGTATCTGTGAGAAAATGTAGAGATATTCTGCCCGGAATGGTACGAGCAGAAATGTTCGGGCAACTGACCACTGGGCTTGAAGCTGCTTGGAGTAAAGTCAAAGGAGAAGAGGTTTTGACCAAAGAAAATATTGTGGAGCCTATGCGTGATATCAGGAGAGCTCTTTTGGAAGCAGATGTTAGCCTTCCTGTTGTTAGAAGGTTTGTGCAAGCTGTCACCGATCAGGCTGTGGGTCTCGGTGTGATTCGAGGAGTTAGACCAGATCAGCAATTGGTTAAGAACGAAATGGGTGTTGACCGTAGGATTTTGCAGATTGTACATGATGAATTAGTAAAACTGATGGGTGGAGAGTTCTCTGAACTGAGTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGGCTACAGGGAGTTGGGAAAACGACTGTTTGTGCAAAGTTGGCAAATTATCTCAAGAAACAGGGAAAAAGTTGCATGCTAGTTGCTGGCGATGTTTACCGACCTGCTGCTATTGACCAACTTGCTATTTTGGGTAAACAGGTGGATGTCCCTGTCTATACAGCAGGTACTGATGTTAAACCTTCTGAAATCGCTAGACAAGGTTTAGAAGAGGCAAAAAAGAAGAACATTGATGTGGTGGTTGTTGACACTGCTGGTAGGCTGCAGATAAACAAATCAATGATGGATGAGTTAAAAGAAGTGAAGAAGGTATTGAATCCAACAGAAACTTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAACTAGATGGTGACTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCCGGAAAGCCAATTAAGCTGGTAGGACGGGGGGAGCGCATGGAAGATCTTGAACCTTTCTACCCTGATCGAATGGCTGGACGCGTATTAGGAATGGGAGATGTTCTTTCATTTGTAGAGAAGGCACAAGAAGTTATGCAACAAGAAGATGCTGAAGAACTTCAAAAGAAGATCATGAGTGCAAAGTTTGACTTCAATGATTTTCTAAAGCAAACTCGTTCTGTTGCTCGAATGGGTTCTGTATCTCGTGTCATTGGAATGATTCCTGGGATGGCGAAGGTCACTCCTGCTCAAATTCGAGACGCAGAGAAGAATTTGATGGTGGTGGAAGCAATGATAGAAGCGATGACCCCTGAGGAGAGGGAAAAGCCGGAACTGTTGGCAGAATCACCTGACAGGAGGAAAAGAGTTGCTCAGGATTCCGGGAAAACGGAGCAGCAGGTAAGCCAACTTGTAGCTCAAATCTTCCAAATGCGTGTTCGTATGAAGAATCTGATGGGTGTAATGCAAGGTGGATCAATGCCAGCCCTAAGTAATATTGAGGAATCACTTAAAACAGAAGAAAAGGCTCGATTTTTGTTGTTGCTCCACCTGGTACCGCAAGAAGGAGGAGGAGACCGGAATCAAGGAAACAGTTCGCGAATTGAACATCGGCAAGACCTGATGTGCATGGTTTTAGGAGCAAAAGTTAATAATATGGATACATCGAATCTTGCAGTCTTTGTCAATGCAGAACTGTTACACTTTTATGTTGGAAGGAAGGTTCGGGCAGTGATGCAGGTAATCCGGTCGGACGGTGGAGCTGTCATTGGAAAATCGACAGATGAGAAGCAGCTAGTTGTAAAAGGATCACCCCCATCTGTTCCACTTACAAATTTTGTGGAAGTTATTGGTATTGTTGACAATGAAAAATGCATTCGCGCTGAGACATGGACCAATTTTGGTGATGCAATTGATATGTTTAGCTACAATATGCTTTGTCAGCTTGCAAATGGAGAATTTAAACACTTGTTCCTGTGA 2094 0.436 MEALHFSTVASRHFSISLSHNRTFSSSSYSTHKPTKLSSSWTGSSFSSSRNNLFTNEIWGWVNSKSVSVRKCRDILPGMVRAEMFGQLTTGLEAAWSKVKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVTDQAVGLGVIRGVRPDQQLVKNEMGVDRRILQIVHDELVKLMGGEFSELSFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIARQGLEEAKKKNIDVVVVDTAGRLQINKSMMDELKEVKKVLNPTETLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRVLGMGDVLSFVEKAQEVMQQEDAEELQKKIMSAKFDFNDFLKQTRSVARMGSVSRVIGMIPGMAKVTPAQIRDAEKNLMVVEAMIEAMTPEEREKPELLAESPDRRKRVAQDSGKTEQQVSQLVAQIFQMRVRMKNLMGVMQGGSMPALSNIEESLKTEEKARFLLLLHLVPQEGGGDRNQGNSSRIEHRQDLMCMVLGAKVNNMDTSNLAVFVNAELLHFYVGRKVRAVMQVIRSDGGAVIGKSTDEKQLVVKGSPPSVPLTNFVEVIGIVDNEKCIRAETWTNFGDAIDMFSYNMLCQLANGEFKHLFL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0173 697 SMART SRP54_N_2 84 180 IPR013822 GO:0005525|GO:0006614
Lal20g0173 697 Pfam Signal peptide binding domain 420 518 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lal20g0173 697 Hamap Signal recognition particle 54 kDa protein [srp54]. 88 536 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal20g0173 697 Gene3D - 593 697 IPR012340 -
Lal20g0173 697 Gene3D - 184 378 IPR027417 -
Lal20g0173 697 SMART AAA_5 193 340 IPR003593 -
Lal20g0173 697 TIGRFAM ffh: signal recognition particle protein 86 521 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal20g0173 697 PANTHER BNAC02G02820D PROTEIN 59 554 - -
Lal20g0173 697 Gene3D - 87 399 IPR042101 -
Lal20g0173 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 391 IPR027417 -
Lal20g0173 697 Pfam SRP54-type protein, GTPase domain 194 388 IPR000897 GO:0005525|GO:0006614
Lal20g0173 697 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 362 375 IPR000897 GO:0005525|GO:0006614
Lal20g0173 697 SUPERFAMILY Nucleic acid-binding proteins 599 696 IPR012340 -
Lal20g0173 697 Gene3D - 400 524 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lal20g0173 697 CDD SRP_G 195 387 - -
Lal20g0173 697 Pfam SRP54-type protein, helical bundle domain 88 159 IPR013822 GO:0005525|GO:0006614
Lal20g0173 697 MobiDBLite consensus disorder prediction 477 501 - -
Lal20g0173 697 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 59 554 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal20g0173 697 MobiDBLite consensus disorder prediction 477 499 - -
Lal20g0173 697 CDD RPA3 599 696 - -
Lal20g0173 697 SMART SRP54_3 194 389 IPR000897 GO:0005525|GO:0006614
Lal20g0173 697 Pfam Replication factor A protein 3 591 693 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal20g0173 697 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 83 187 IPR036225 -
Lal20g0173 697 SUPERFAMILY Signal peptide-binding domain 391 523 IPR036891 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0173 Lal-Chr20 1193443 1200911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0173 591 697 Core DNA Replication Machinery Family AT4G18590 65.421 2.44e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0173 K03106 - tcc:18598256 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0173 20 1193443 1200911 Lal20g0173 20 1193443 1200911 ECH
Lal11g1243 11 16162618 16168216 Lal20g0173 20 1193443 1200911 LSH