Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0157 ATGCCACCGAAGCAGCAATCAAAAGCAGATATAGCGAAGAAACAGAAGCTTGTAGAAGACAAAACCTTCGGTCTCAAGAACAAAAACAAAAGCAAAAATGTTCAAAAATATGTTCAGAATCTCAAACAATCCATCCCGCAACCCGATGCTGCAAAAATCGCTGCTAAGAAAAAGAAGGAGGAAGAGAAAGCCAAGGAAAAGGAGCTAAATGATTTATTCAAAATCGCTGTTAGTCAGCCTAAAGTCCCAGTTGGTGTTGATCCCAAGTCCATAGTATGTGAGTTTTTTAAAGTGGGGCAGTGTACCAAGGGATTCAAATGCAAATTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGCGATAAGCGCTACGATGAAACAATGGAGGATTGGGATCAAGAGACATTGGAGAAGGTGGTAGAGTCAAAGAAAAATGAGTATAATCAGAACAAACCTACAATATGGTTGGTTTTGGGTCTGCCCTAA 504 0.3968 MPPKQQSKADIAKKQKLVEDKTFGLKNKNKSKNVQKYVQNLKQSIPQPDAAKIAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSIVCEFFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRYDETMEDWDQETLEKVVESKKNEYNQNKPTIWLVLGLP 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0157 167 Coils Coil 50 72 - -
Lal20g0157 167 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Lal20g0157 167 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Lal20g0157 167 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 159 - -
Lal20g0157 167 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Lal20g0157 167 Gene3D - 85 156 - -
Lal20g0157 167 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0157 Lal-Chr20 1093387 1093890 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal20g0157 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0157 - - gmx:100806617 285.804