Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0139 ATGCGTAACGGTAACAACAACACTTCTGCTTCAAGTTCTTCTGATGCAGTAACTGGCCGTCACCCTTTGTATCGTGGTGTGAGGCGCAGGAGCAGTGGAAAATGGGTTTCTGAAATCCGTGAACCTAAGAAACCTAATAGGATTTGGTTAGGAACATTTCCTACACCAGAGATGGCTGCAATTGCTTATGATGTTGCGGCGCTCGCTCTCAAAGGAAAGGATGCTGTACTCAACTTCCCTAACTTGGCTTCTTCTTTGCCTGTTCCTGCTTCTTCGGCTGCCCGCGATATTCAAATGGCTGCAACTAGTGCTGCAACCGCTATCGGGGCAGCGAAAGATGCTATAACAGGTAGTGAAGGAAGCGTAGGAGGGCATGTTCCAGTGTCACAAGAGAATAATATGGCTTCAGGGAGTGAGTTTGTGGATGAGGATTTAATCTTTGATATGCCAAATATTTTGGCCTATATGGCTGAAGGAATGTTGCTTAGCCCTCCTCGTTTTGATATTGATGGTGGTGAATATGACTATGTTACACAAGAAAACATTGGGGAAGATTCAAGCCTCTGGAATTTCCCTTATCCGTAA 585 0.453 MRNGNNNTSASSSSDAVTGRHPLYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKDAVLNFPNLASSLPVPASSAARDIQMAATSAATAIGAAKDAITGSEGSVGGHVPVSQENNMASGSEFVDEDLIFDMPNILAYMAEGMLLSPPRFDIDGGEYDYVTQENIGEDSSLWNFPYP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0139 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 192 - -
Lal20g0139 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 7 192 - -
Lal20g0139 194 MobiDBLite consensus disorder prediction 1 31 - -
Lal20g0139 194 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Lal20g0139 194 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Lal20g0139 194 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Lal20g0139 194 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Lal20g0139 194 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Lal20g0139 194 MobiDBLite consensus disorder prediction 1 18 - -
Lal20g0139 194 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Lal20g0139 194 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Lal20g0139 194 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0139 Lal-Chr20 924833 925417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0139 19 192 AP2-EREBP Transcription Factor Family AT2G36450 62.570 4.11e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal20g0139 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0139 - - gmx:100799620 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0139 20 924833 925417 Lal20g0139 20 924833 925417 ECH
Lal11g1203 11 15777536 15778123 Lal20g0139 20 924833 925417 LSH
Lal13g1413 13 13536759 13537322 Lal20g0139 20 924833 925417 PCT