Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0138 ATGGAAATGGAAGATCACCATCACCATTATCAGTCACACTATAGTATTACTGATCTGAGGCACCTAGTAAACGGACCAACTTCTACAACTACCCTTTTCTCCTCCATCCCATCACCACCACCCACGGTGGACCTCTTCCCAAATCTGATAGCTACCACTCAACACTATGAGATGATGATGTTTGGTCGTCAAGTAGCAGAAATAATGCCACCTTGCAGCCTTCGTGACTTTGTCTCCACCACCACCACCACCACCACCACTAATAGTGCTTCAACTCCTCCACTTAATGGTTTAGTGGCTGAGATGGCAGGTTGCATAGGTGGAGATGCCACCACCGGAAGATGGCCCAGACAAGAGACTCTTTCTCTTCTTCACATCAGATCTTGTTTGGACCCTAAGTTTAAAGAGGCTAATCAAAAGGGTCCCTTGTGGGATGAAGTTTCAAGGATCATGTCTGAAGAACACGGATACCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTCGAGAATCTGTACAAATATTACAAGAAGACAAAGGAAGGTAAAGCTGGAAGACAAGATAAGAAGCATTACAGATTCTTTCGTCAACTTGAAGCTTTATATGGAGAAAACAGTAACCAAACCTCAGTTCCAGATACCAACTTTTGTAGCAGCATTGGTCCTTTTCATACAACTAGCCATGCACCCTCTCAAAGAAATCAAGAAATAATGTATCAGCCTCACAAGCGTAACTGTGATAGTCTCAGCCTCACTAACTCCACTGATTTTGATACTTCATCTTCTGATGATAATGACCATGGCACTGAGAAACTAAACGACAGTGACTCCATGGACAAGAGGAGAAAAAAGATGAGTGGAAGGAGATGGAAGGTAAAGATAAAAGAGTTCATTGAGTCACAGATGAGGAAGTTGGTGGAGAAGCAAGAGGAATGGATGGATAAGCTAATGAAGAGAATGGAAGAAAAGGAAAATGAGAGGGTGTTGAGAGAAGAAGAGTGGAAGAGACAAGAATCTGAAAGGTTAGAGAGAGAACACAAGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCAAGGGATGTTGCTGTAATGGAAGCTTTGCAAAAATTAACAGGAAGAGAGATTGAGAGTAATGGAGTTCAAAACCACAATGATGATGGAGGAAGTGAAATAAAAAATACCATAAGAAATAACTATTCAAGGAGTAATAATGCAAGGGAAGCAAACAAAAAGAGAAAGGAAAAGTCATCAACAAATTGTTTTTACTTTGATAACAATGATCATCAATCAAATTCTCTATATACTCATCAAGGAAGTGGTGACTATTGTGATATCAATGATCATAGGCAAGACAGTGCAAGGAGGTTACAAACAAAAGATGGTTCTTCTCTTTCAAATTCCAATGTTTGCTTTCCTTTATTGATGAGTGAGGGAGAGAATCTGTGGGAAAACTATAGCTTAAAAGTTAGCAAAGCAAATCAAAACCAGAAGCAGTAA 1494 0.4036 MEMEDHHHHYQSHYSITDLRHLVNGPTSTTTLFSSIPSPPPTVDLFPNLIATTQHYEMMMFGRQVAEIMPPCSLRDFVSTTTTTTTTNSASTPPLNGLVAEMAGCIGGDATTGRWPRQETLSLLHIRSCLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDKKHYRFFRQLEALYGENSNQTSVPDTNFCSSIGPFHTTSHAPSQRNQEIMYQPHKRNCDSLSLTNSTDFDTSSSDDNDHGTEKLNDSDSMDKRRKKMSGRRWKVKIKEFIESQMRKLVEKQEEWMDKLMKRMEEKENERVLREEEWKRQESERLEREHKFWAKERAWIEARDVAVMEALQKLTGREIESNGVQNHNDDGGSEIKNTIRNNYSRSNNAREANKKRKEKSSTNCFYFDNNDHQSNSLYTHQGSGDYCDINDHRQDSARRLQTKDGSSLSNSNVCFPLLMSEGENLWENYSLKVSKANQNQKQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0138 497 Pfam Myb/SANT-like DNA-binding domain 114 200 IPR044822 -
Lal20g0138 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 396 487 - -
Lal20g0138 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 41 397 - -
Lal20g0138 497 PANTHER - 396 487 - -
Lal20g0138 497 PANTHER - 41 397 - -
Lal20g0138 497 CDD GT1 114 179 - -
Lal20g0138 497 MobiDBLite consensus disorder prediction 248 285 - -
Lal20g0138 497 MobiDBLite consensus disorder prediction 374 403 - -
Lal20g0138 497 ProSiteProfiles Myb-like domain profile. 107 172 IPR001005 -
Lal20g0138 497 MobiDBLite consensus disorder prediction 259 282 - -
Lal20g0138 497 Coils Coil 305 344 - -
Lal20g0138 497 MobiDBLite consensus disorder prediction 374 415 - -
Lal20g0138 497 Gene3D - 115 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0138 Lal-Chr20 906556 911866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0138 405 490 Trihelix Transcription Factor Family AT5G03680 31.683 1.67e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal20g0138 Myb_DNA-bind_4 7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0138 - - gmx:100815903 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0138 20 906556 911866 Lal20g0138 20 906556 911866 ECH
Lal11g1202 11 15754457 15759940 Lal20g0138 20 906556 911866 LSH
Lal20g0138 20 906556 911866 Lal13g1412 13 13509304 13512904 PCT
Lal13g1412 13 13509304 13512904 Lal20g0138 20 906556 911866 PCT