Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0133 ATGGACCCTCGCAGAAGAGGTATCGAACCGGGCGCCAAGAAACCTCGATTGATCAACGACCTAGACCGTGGTTCGGTTCTCGGTCCACGACCGTTGCCTCAGCGGCAAGCGGCTTCGGGGCGCGGTGGTGACGATGGTGGTGGTTATCATCCGCAGCCACCGCCGCACCAAGAGCTTGTGGTTCAGTATAAGACTGCGCTTGCTGAGCTCACTTTCAATTCAAAGCCTATTATTACGAATTTGACTATAATTGCTGGAGAGAATCTAGCTGCTGCGAAGGCAGTTGCTGGCATTGTTTGTTCTAACATTCTTGAGGTTCCAAGTGAACAAAAGCTGCTATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGGCAAGATTATATAAAATATTTTGCCACCAGACTACCTGAGGTATTCTGCGAGGCATACAGACAAGTTGACCCTCCAGTACATTCAAATATGAGACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTACTCAGACTCTTCAGATGATTGAGAAGGAACTTGGCTTTACTTCTGCAGCCAATGGTTCAGCTTCAGCGTCTGCTTCAGTCAGGAGTGACTCACAGTCACAACGCCCACCTAATAGCATCCATGTGAATCCCAAATATTTAGAAAGGCAGCGTCTTCAGCAGTCCATCAAGAATAAAGGAGGAGTAAATGATATGAATGTAGCTATTTTAAAATCAAAAGAGGACCCAGAGAGAGTTTTGGGTTCTGGACGACCACCACTGGATCCTAGGATTACCATGCAAAATAATCAACGCACTAACAGATATGCATTTAATGATTCTGTTCCTGAAAAGAGCATTGATGAGTCCTTTGGAGGCAATGAATATAGTTCTGATACTTCAAATAACTTGAGCTTAGTTGTTAGAAGACCTGGTGGTAGGGTCACTGAGTTAGGACATGACAAACCTTTGTACAAAGCAGGTGGTGGTTTTGCAGAGACCAGATCAGGCCAAGGAAATGGTTTCAGTGTTAAGCATGGCTTTTCGAATCATGAAGCATTGAAGTCGGTGAAATTGGATGTACATCATCAGCCAACACTGAACATAAGTAACAAAAGGAGCAGTGTGATGTCAAGTAACTGGAAAAATTCTGAGGAAGAGGAGTTCACGTGGGATGAGATGAACTCTGGGTTGGCTGATCATGGTGCCCTCAATGTCTCTGACAACTTGAGTACAGACACATGGACTTTGGATGATGAGAATTTGGAAGGTGAAGGTCACTTCCAAATTGCACAAATATCCAATTTTAAGAAACAGCTACCTGTATTTGCGGGCCATCAATCATTGTCATGGAAAATGCAGGATCAGCACTCAATTGATAAGTTGAAACTGAAGCCAGGTCACTCAAAGGAACTTTTGTCCACTTTTGGTGGGTTTCCAACCCACACAAATTCTCTGTCTACTGGGATGGGGAATCGGCCTTTCATGCCAAATGCAACAACTAGAACGCCCGAAGTTATGAGACAACAGCAATTTGACTCTGTGGGAGCCGAATCCCCTTCTGGGCAGTCACCTTTGCGAGAGCAGTCTCCGTCACCGCCACAAATTGTGCGCCACCCTCATCCAGCCCGAAGTTTGGCTAAGCAAGATCGTTCCCATTCTCTTAAAATGTCTCAAAATTTGAAAGCTCCGCCGAGCCAACATATCAGAGATCATTTGCCTGCCCTTCCTCCCAATGTCCAGGTTGGTAACTTGCGAAGATCACAGGAAACGGACTTGCAGGATTCATTATCTTCGGCAACTTCTTTTCAGCCAAGGCTTCAGCAGCAGCAGCATCCGGGTCCTTCTCAGACTGAAGTTACTGTTAAAACTAAGAAGCCACCCCAGTCTAAAGTTACTCCAGCCAGAGAAACTTCAGAACAGTTAAACACCACTAGTTTGTCAGCTGCGGCTGTGAAAAGTGGAACCCTCTCCAACAAATCAACTACTAGTAGCGTTCATACTACAAGTGGTCTGGATAAAAGGAATATTCAACCTAAATTAGGGGTCAGGCCTACTCAGTCAAGCGGTCCTTCCCCTACCACATTAATTTCTCCAGTGTCTGTAGTTCCATCACCATCTTCATTAGGCCCTTCGAACGGTGATTCACCTACTCTGCCAAAGATGCCTCAACGAAAGGCTGGACAGCCTCAAAGTGTGTCTACTCAATTACCAGCCTCCTCTAATGTGAGCAATGCCTCAGATCCGATTTCAAATGCTAGCAATAATAATACATCAAATCCATTTGCCAACCTTTTGAGCTCATTAGTTGCAAAGGGTTTGATATCTTCAGAAACAGAGTCACCGACCAAGGTACCAACTGAGATGCCGAGTCGATTGGAAGACCAAACAGAAAGCGTTGCTGCCAGTAGCTCTTTGCCAGTTGTTCCAGTTTCTATTTCTGCAGCTGTCCTAGTACCATCTTCCAGAGATGAGGTAGATGATACTACAAAACCCGTGCTTGCCTTGTCTAAATCATCCAGCACGGAAATCAGAAATCTCATTGGCTTTGATTTTAAGCCTGAAGTAATCCGAGAAATGCATCCACATGTAATTAGCACTTTGTTGGATGATCTCCCACATCATTGCACAGTTTGTGGTATTAGGCTTAAACTGCAAGAACAGTTTGATAGACACTTAGAGGGGCATGCCACTAGAGAAAGAGAACAAAGTGGTCTAATTATGGCATCAAGAAAATGGTATGCAAAATCAAATGATTGGATTGTTGGCAAGGCTGAGTATCTCACTGAGTGCGAGCTAACTGATTCTGTAGATGTATATGACAAGGAAACAGAGGAGAATGGATTGGATACTCTGGTTTTAGCAGATGAAAACCAGTGCTTGTGTGTACTGTGTGGCGAGGTATTTGAAGATGTGTACTGCCGCGAAAGGGATGCGTGGATGTTCAATGGGGCTGTTTACTTGAACAACACAGATGGCGATAGTGAGATGGAAAATAGAAACGTAGGTCCCATCATTCACGCTAGATGCTTATCAGAGAACCCAATATCTACTGTCACTTAG 3045 0.4443 MDPRRRGIEPGAKKPRLINDLDRGSVLGPRPLPQRQAASGRGGDDGGGYHPQPPPHQELVVQYKTALAELTFNSKPIITNLTIIAGENLAAAKAVAGIVCSNILEVPSEQKLLSLYLLDSIVKNIGQDYIKYFATRLPEVFCEAYRQVDPPVHSNMRHLFGTWKGVFPTQTLQMIEKELGFTSAANGSASASASVRSDSQSQRPPNSIHVNPKYLERQRLQQSIKNKGGVNDMNVAILKSKEDPERVLGSGRPPLDPRITMQNNQRTNRYAFNDSVPEKSIDESFGGNEYSSDTSNNLSLVVRRPGGRVTELGHDKPLYKAGGGFAETRSGQGNGFSVKHGFSNHEALKSVKLDVHHQPTLNISNKRSSVMSSNWKNSEEEEFTWDEMNSGLADHGALNVSDNLSTDTWTLDDENLEGEGHFQIAQISNFKKQLPVFAGHQSLSWKMQDQHSIDKLKLKPGHSKELLSTFGGFPTHTNSLSTGMGNRPFMPNATTRTPEVMRQQQFDSVGAESPSGQSPLREQSPSPPQIVRHPHPARSLAKQDRSHSLKMSQNLKAPPSQHIRDHLPALPPNVQVGNLRRSQETDLQDSLSSATSFQPRLQQQQHPGPSQTEVTVKTKKPPQSKVTPARETSEQLNTTSLSAAAVKSGTLSNKSTTSSVHTTSGLDKRNIQPKLGVRPTQSSGPSPTTLISPVSVVPSPSSLGPSNGDSPTLPKMPQRKAGQPQSVSTQLPASSNVSNASDPISNASNNNTSNPFANLLSSLVAKGLISSETESPTKVPTEMPSRLEDQTESVAASSSLPVVPVSISAAVLVPSSRDEVDDTTKPVLALSKSSSTEIRNLIGFDFKPEVIREMHPHVISTLLDDLPHHCTVCGIRLKLQEQFDRHLEGHATREREQSGLIMASRKWYAKSNDWIVGKAEYLTECELTDSVDVYDKETEENGLDTLVLADENQCLCVLCGEVFEDVYCRERDAWMFNGAVYLNNTDGDSEMENRNVGPIIHARCLSENPISTVT 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0133 1014 MobiDBLite consensus disorder prediction 772 798 - -
Lal20g0133 1014 MobiDBLite consensus disorder prediction 505 525 - -
Lal20g0133 1014 MobiDBLite consensus disorder prediction 576 750 - -
Lal20g0133 1014 MobiDBLite consensus disorder prediction 1 20 - -
Lal20g0133 1014 SMART 558neu5 58 180 IPR006569 -
Lal20g0133 1014 MobiDBLite consensus disorder prediction 191 208 - -
Lal20g0133 1014 SUPERFAMILY ENTH/VHS domain 55 177 IPR008942 -
Lal20g0133 1014 MobiDBLite consensus disorder prediction 505 750 - -
Lal20g0133 1014 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 4 1013 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lal20g0133 1014 MobiDBLite consensus disorder prediction 1 56 - -
Lal20g0133 1014 Pfam CID domain 65 173 IPR006569 -
Lal20g0133 1014 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 4 1013 - -
Lal20g0133 1014 CDD CID_Pcf11 62 172 - -
Lal20g0133 1014 ProSitePatterns Zinc finger C2H2 type domain signature. 870 890 IPR013087 -
Lal20g0133 1014 Gene3D - 52 180 IPR008942 -
Lal20g0133 1014 MobiDBLite consensus disorder prediction 191 211 - -
Lal20g0133 1014 ProSiteProfiles CID domain profile. 55 183 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0133 Lal-Chr20 883820 889835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0133 46 392 C2H2 Transcription Factor Family AT4G04885 38.395 2.10e-56 208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0133 20 883820 889835 Lal20g0133 20 883820 889835 ECH
Lal1g1772 1 20082092 20088685 Lal20g0133 20 883820 889835 LSH