Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0125 ATGGGCTCCTATGCTACTCCTCTTGCTATTGGTGTTTCTGGCATTATCATCTCTACTCTTTTATTAGCAGCATACCATTTTATTTTCTTCAAATGTTGCTCTAGAGATCGACGCGCGCCGCGTAACAACAATGGAATCCATGGCAATATCAAGAGTAGTTGTTGTGGTGTTCAAGATGAAATCCTCAATAAAATCCCGGTTATCACATACTCAATCAATTTAATTGGTTTGGATCAAATTGAATGTTCAATTTGCCTTGGTGAATTAGAGGATGGTGATTTGGTAAGAGTGTTACCGTCTTGTAACCATGCTTTTCATATTCCATGTATTGATGCATGGTTCAAAGAACATGAGAGTTGTCCATTTTGTCGGTCAGAAATCACACGTGATATTGAAGAATCGATGATGATGCCAAATAATTCAGATGAAGTACAACAAGAAAGGGTCTTGCATGAATTTACTCCTCCCATTAATCATCATAGTAGTGATAATCACAATCAGTTAATAGAAGATGTGTGTAATTGTACTACAACCTCAAGATATCAACGTCGACACTCTATTTCTATCTCATCAAATCTACCAAAAAGACCCGAAGTTTTAAAGAGGTCTTTGTCTATGGATGAGACATATTTATATATTCGCATGTCTTCAGTGTTGAAGAGATCTTTGTCACAATTGAGGAATAATAGTTATAGAGGTGGGAGATACAATCTCGGTATTCTTCCAAATTAA 732 0.3634 MGSYATPLAIGVSGIIISTLLLAAYHFIFFKCCSRDRRAPRNNNGIHGNIKSSCCGVQDEILNKIPVITYSINLIGLDQIECSICLGELEDGDLVRVLPSCNHAFHIPCIDAWFKEHESCPFCRSEITRDIEESMMMPNNSDEVQQERVLHEFTPPINHHSSDNHNQLIEDVCNCTTTSRYQRRHSISISSNLPKRPEVLKRSLSMDETYLYIRMSSVLKRSLSQLRNNSYRGGRYNLGILPN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0125 243 PANTHER RING-H2 FINGER PROTEIN ATL73-LIKE 2 217 - -
Lal20g0125 243 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Lal20g0125 243 Pfam Ring finger domain 81 124 IPR001841 -
Lal20g0125 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 133 IPR013083 -
Lal20g0125 243 SMART ring_2 82 123 IPR001841 -
Lal20g0125 243 SMART FANCL_C_2 78 132 - -
Lal20g0125 243 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 217 IPR044675 -
Lal20g0125 243 CDD RING-H2_PA-TM-RING 81 124 - -
Lal20g0125 243 SUPERFAMILY RING/U-box 71 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0125 Lal-Chr20 821978 822709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0125 10 128 C3H Transcription Factor Family AT5G17600 34.615 3.50e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0125 - - aprc:113863869 175.252