Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0120 ATGGCATTCAATTTTGGAGTCCTTATGACCTCATCATTGTTCTTCCTTATTGCATTTCAAATCCACGATGTCCATGCAAAACGTAACTTGGCATCATGGGAGAAAGCTTATGCCACTTTCTACGAAGGAAGCACTACAACATATGGAGGAGGATGTGGGTATGAGGATGTTGTTAAACAAGGTTATGGTCTAGACACAACAGCATTGAGCACAGTTTTGTTCAAAGAAGGTAAGACATGTGGTGCATGTTTTGAGATCAAATGTAGTTCTTCAAAGTGGTGTAAGACCAAAGAGACTATAACTGTCACTGCAACAAACTATTGTCCTCCCAATTTTGAACAAGATAGCAACAATGGAGGATGGTGCAATCCACCTAGAGAGCACTTTGATTTAACAATACCAGCATTTCTTAAAATTGCTGAGTACGAAGCTGGCATTGTTCCTATCAACTACCGCAGGGTATCATGCAAGAGGGAAGGTGGCATTAGATTCACAATAAGTGGGAATCCATACTTCTATCTAGTGGGTGTGTCCAACGTTGGAGGATCTGGAGAAGTTGTAGGAGTCCAAGTGAAGGGTGACCAGACCCCATGGACAAATATGGATAGAAATTGGGGTCAGAATTGGGACACTAATGCTAATTTACAAGGACAGAGATTGAGCTTTAAGGTGAAGTTAAGTGATGGAAGTTATTCAACATCATCAAATGTTTTCCCAGAAAATTGGCAGTTTGGTCAAACCTATCTAGGCAGAAACTTTCCTTAA 765 0.4065 MAFNFGVLMTSSLFFLIAFQIHDVHAKRNLASWEKAYATFYEGSTTTYGGGCGYEDVVKQGYGLDTTALSTVLFKEGKTCGACFEIKCSSSKWCKTKETITVTATNYCPPNFEQDSNNGGWCNPPREHFDLTIPAFLKIAEYEAGIVPINYRRVSCKREGGIRFTISGNPYFYLVGVSNVGGSGEVVGVQVKGDQTPWTNMDRNWGQNWDTNANLQGQRLSFKVKLSDGSYSTSSNVFPENWQFGQTYLGRNFP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0120 254 SUPERFAMILY PHL pollen allergen 158 249 IPR036749 -
Lal20g0120 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Lal20g0120 254 SMART dpbb_1 66 151 IPR007112 -
Lal20g0120 254 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Lal20g0120 254 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Lal20g0120 254 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Lal20g0120 254 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Lal20g0120 254 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Lal20g0120 254 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Lal20g0120 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Lal20g0120 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Lal20g0120 254 PANTHER EXPANSIN-A32 24 253 - -
Lal20g0120 254 PANTHER EXPANSIN-A15 24 253 IPR002963 GO:0009664
Lal20g0120 254 SUPERFAMILY Barwin-like endoglucanases 32 179 IPR036908 -
Lal20g0120 254 Gene3D - 20 157 IPR036908 -
Lal20g0120 254 Gene3D - 161 253 IPR036749 -
Lal20g0120 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Lal20g0120 254 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Lal20g0120 254 Pfam Lytic transglycolase 66 151 IPR009009 -
Lal20g0120 254 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Lal20g0120 254 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Lal20g0120 254 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Lal20g0120 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Lal20g0120 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0120 Lal-Chr20 785069 787092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0120 1 253 Expansin Gene Family AT3G55500 55.814 8.99e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0120 - - gmx:100800424 321.242