Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0119 ATGGCATTCAATTTTGGAGTCCTTGTGACCTCATCATTGTTCTTCCTTATTGTATTTCAAATCCATGATGTCCATGCAAACCGTCCATGCAGAGGACGTAACTTGGCATCATGGAAGAAAGCTTATGCCACTTTCTACGAAGGAAGCTCTACAACATATGGAGGAGGATGTGGGTATGAAGATGTTGTTAAACAAGGTTATGGTATGGATACAACAGCATTGAGCACAGTTATGTTCAAAGAAGGTAAGACATGTGGTGCATGTTTTGAGGTCAAATGTAGCTCTTCGAAGTGGTGTAAGACCAGAGACACTATAACTGTCACTGTAACAAACTATTGTCCTCCCAATTTTGAACAAGATAGCAACAATGGAGGATGGTGCAATCCACCTAGACACCACTTTGATTTAGCAATACCAGCTTTTCTTAAAATTGCTGAGTACGAAGCTGGCATTGTCCCTATTCACTATCGCAGGGTATCATGCAAGAGGGAAGGTGGCATTAGATTCACAATAAGTGGGAATCCATACTTCTATCTAGTGGGTGTGTCCAACGTTGGAGGATCTGGAGAAGTTGTAGGAGTCCAAGTGAAGGGTGACCAGACCCCATGGACAAATATGGATAGAAATTGGGGTCAGAATTGGGACACTAATGCTAATTTACAAGGACAGAGATTGAGCTTTAAGGTGAAGTTAAGTGATGGAAGTTATTCAACATCATCAAATGTTTTCCCAGAAAATTGGCAGTTTGGTCAAACCTATCTAGGCAGAAACTTTCCTTAA 780 0.4115 MAFNFGVLVTSSLFFLIVFQIHDVHANRPCRGRNLASWKKAYATFYEGSSTTYGGGCGYEDVVKQGYGMDTTALSTVMFKEGKTCGACFEVKCSSSKWCKTRDTITVTVTNYCPPNFEQDSNNGGWCNPPRHHFDLAIPAFLKIAEYEAGIVPIHYRRVSCKREGGIRFTISGNPYFYLVGVSNVGGSGEVVGVQVKGDQTPWTNMDRNWGQNWDTNANLQGQRLSFKVKLSDGSYSTSSNVFPENWQFGQTYLGRNFP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0119 259 Gene3D - 166 258 IPR036749 -
Lal20g0119 259 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Lal20g0119 259 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Lal20g0119 259 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Lal20g0119 259 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Lal20g0119 259 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Lal20g0119 259 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Lal20g0119 259 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Lal20g0119 259 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Lal20g0119 259 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Lal20g0119 259 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Lal20g0119 259 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Lal20g0119 259 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Lal20g0119 259 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Lal20g0119 259 Pfam Lytic transglycolase 71 156 IPR009009 -
Lal20g0119 259 SUPERFAMILY Barwin-like endoglucanases 37 184 IPR036908 -
Lal20g0119 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 166 IPR007112 -
Lal20g0119 259 PANTHER EXPANSIN-A32 26 258 - -
Lal20g0119 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Lal20g0119 259 PANTHER EXPANSIN-A15 26 258 IPR002963 GO:0009664
Lal20g0119 259 SMART dpbb_1 71 156 IPR007112 -
Lal20g0119 259 Gene3D - 24 162 IPR036908 -
Lal20g0119 259 SUPERFAMILY PHL pollen allergen 163 254 IPR036749 -
Lal20g0119 259 Pfam Expansin C-terminal domain 167 244 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0119 Lal-Chr20 781139 782514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0119 1 258 Expansin Gene Family AT3G55500 54.962 5.74e-99 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0119 - - gmx:100800424 318.931