Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0117 ATGCAGGTCCAAGAGGAACAACAACAACAACAACAAGAACATGATCTCAATCACATGCAAATGATCAAGTTCAAGGGCAAGCGTACAAAGCGTCAAAGACTACCATCCCCGATTAGGTTAACCATGTCATCAACATCTAGGACTAATAATTCGGAAGAGGAAGACATGGCGAATTGTTTGATTCTCTTGGCTCAAGGACGACAATATCATCAAACACAGAAAGTCTCAGAGCCATATCATATGATGACAACACCTGATCATAACAAAAATAACATTAGCAAGAAGATAGGGTTATATGTTTATGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTCCAAGCCCTTGGTGGCCATAGTGTCAGCCACAAGAAACCTAAGGCCAATAATATTACACAAGATCAAAAGCAAGGAGGACTTACTAGTTTTGTGAATGGTGGTAATGATGATAATTATGACCCTACAGAAACAAACACTACCCTCACCTTGCAAATACCAAATAATAATAGGGTTTTGTATGGCACAAACACTGCAACTAAGACTAGTATTACTAAATGTAATAAAGTTCATGAGTGTTCCATTTGTGGGGCTGAATACACATCTGGGCAAGCCTTAGGGGGACATATGAGAAGGCATAGAACTATTTTGAACACTACTTCTACAACAAGTAATTATTCTATGAGTGGTGCAAATAATAATGAATCTGTAGAGGTCAAGAGACCTAGAAATGTTTTGAAGTTGGACTTGAATCTTCCTGCACCTGAGGATGATCAAAGAGAACACAAGTTGCAGTTTCAGTCCAAAGAAAAAGTTATTGTCTTCAATGCAACTTCTTTGGTGGATTGTCATTACTAA 855 0.3836 MQVQEEQQQQQQEHDLNHMQMIKFKGKRTKRQRLPSPIRLTMSSTSRTNNSEEEDMANCLILLAQGRQYHQTQKVSEPYHMMTTPDHNKNNISKKIGLYVYECKTCNRCFPSFQALGGHSVSHKKPKANNITQDQKQGGLTSFVNGGNDDNYDPTETNTTLTLQIPNNNRVLYGTNTATKTSITKCNKVHECSICGAEYTSGQALGGHMRRHRTILNTTSTTSNYSMSGANNNESVEVKRPRNVLKLDLNLPAPEDDQREHKLQFQSKEKVIVFNATSLVDCHY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0117 284 Gene3D Classic Zinc Finger 98 212 - -
Lal20g0117 284 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Lal20g0117 284 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 26 284 - -
Lal20g0117 284 PANTHER ZINC FINGER PROTEIN ZAT5 26 284 - -
Lal20g0117 284 MobiDBLite consensus disorder prediction 131 160 - -
Lal20g0117 284 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Lal20g0117 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Lal20g0117 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 212 IPR013087 -
Lal20g0117 284 SUPERFAMILY beta-beta-alpha zinc fingers 100 212 IPR036236 -
Lal20g0117 284 Pfam C2H2-type zinc finger 100 126 - -
Lal20g0117 284 Pfam C2H2-type zinc finger 189 214 - -
Lal20g0117 284 SMART c2h2final6 101 123 IPR013087 -
Lal20g0117 284 SMART c2h2final6 190 212 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0117 Lal-Chr20 767694 768548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0117 11 284 C2H2 Transcription Factor Family AT2G28200 39.498 8.31e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal20g0117 zf-C2H2_6 7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0117 - - lang:109356517 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0117 20 767694 768548 Lal12g0788 12 6129885 6130991 ECH
Lal20g0117 20 767694 768548 Lal13g0896 13 6178285 6180093 ECH
Lal20g0117 20 767694 768548 Lal24g0712 24 5314441 5319520 ECH
Lal20g0117 20 767694 768548 Lal20g0117 20 767694 768548 ECH
Lal20g0117 20 767694 768548 Lal2g0316 2 1887267 1888184 ECH
Lal20g0117 20 767694 768548 Lal9g0297 9 1909193 1910110 ECH
Lal20g0117 20 767694 768548 Lal1g0404 1 2487392 2488330 ECH
Lal20g0117 20 767694 768548 Lal10g1218 10 18542256 18543194 ECH
Lal1g1797 1 20297015 20297863 Lal20g0117 20 767694 768548 LSH