Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0115 ATGGCGATAAGAAACATAGCACTAGGAAGGGCAGAAGAGGCAACACACCCAGACACATTGAAAGCTGGTTTGGCTGAGTTTATATCAACATTGATATTCGTGTTTGCTGGTTCAGGTTCAAGTATTGCTTACAATAAGCTTACAAATGATGGTTCAGCTACACCTTCTGGACTCATTGCTGCATCTATTGCTCATGCTTTTGCTCTCTTTGTTGCTGTATCTGTTGGTGCTAACATTTCTGGTGGTCATGTCAATCCTGCTGTTACATTTGGTGCGTTTGTTGGTGGTAACATTACCTTCCTACGTGGTATTGTTTACGTTATTGCTCAGCTTCTTGGATCCATTGTTGCCTCTTTTCTTCTTACCTTCGTCACTGGACTCGGTGTTCCAGCATTTGGTCTCTCAGCTGGAGTTGGTGTTGGAAACGCTGTAGTGCTTGAAATAGTGATTACTTTCGGTCTGGTGTATACGGTGTACGCTACAGCCGTTGACCCAAAGAAGGGTAATATAGGAATTATAGCCCCAATAGCAATTGGTTTCATCGTTGGTGCTAACATTTTGGTTGGTGGAGCTTTCACTGGAGCATCAATGAACCCTGCTGTGGCATTTGGGCCTGCTGTTGTGAGTTGGACATGGACCAACCATTGGATCTATTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGGTTTATCTATGAGGTTCTTTTCATTAACCCTAGTCATGACCAAATCCCAACCACTGATTTCTAG 753 0.4422 MAIRNIALGRAEEATHPDTLKAGLAEFISTLIFVFAGSGSSIAYNKLTNDGSATPSGLIAASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITFLRGIVYVIAQLLGSIVASFLLTFVTGLGVPAFGLSAGVGVGNAVVLEIVITFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVAFGPAVVSWTWTNHWIYWVGPLIGGGLAGFIYEVLFINPSHDQIPTTDF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0115 250 Gene3D Glycerol uptake facilitator protein. 4 249 IPR023271 -
Lal20g0115 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0115 250 PANTHER AQUAPORIN TIP1-1 1 249 - -
Lal20g0115 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0115 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0115 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0115 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0115 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0115 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0115 250 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
Lal20g0115 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lal20g0115 250 PANTHER AQUAPORIN-8 1 249 IPR034294 -
Lal20g0115 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0115 Lal-Chr20 755328 757263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0115 1 250 Major Intrinsic Protein MIP AT2G36830 78.884 1.31e-140 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0115 K09873 - gmx:547967 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0115 20 755328 757263 Lal20g0115 20 755328 757263 ECH
Lal11g1177 11 15526412 15528132 Lal20g0115 20 755328 757263 LSH
Lal1g1798 1 20307448 20309673 Lal20g0115 20 755328 757263 LSH