Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0109 ATGCAAATGTCACAAGAAGAAGATTCTTGTTCTAACACTATTGAGCAGTGGAAATGGTCTGAAATGCAAGGCCTTGAGCTCCACCCACATTCTCAATCTCCCAAACCACACCAACAACAAATGGATACTTCTCTTTCTCAACAACCCAACAAAGATATTGATGGTGCTATTTCTAATGGTGGTAATGGGAATGGTAACAATACTAGTAGTATTAGTAGTAGTAGTAGTGGGGAAAAGAAGAAAACAAAAGCTGAGAGTGTTCCTCCTATAGGGTTTGTTAAGCTTTTCAGATTTGCTGATGGGTTGGATTGCATTCTCATGGCAATTGGAACTGTTGGAGCTATTGTACATGGTTGTTCTTTGCCTATTTTCCTTCGCTTCTTTGCTGATCTTGTTAATTCATTTGGTTCTAATGCTAATGATCTTGACAAAATGACCCAGGAAGTTGTCAAGTATGCATTTTATTTCCTTGTGGTAGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCGTGTTGGATGTGGACCGGAGAGCGCCAATCAACTAAGATGAGGATCAAGTACTTGGAAGCTGCTTTGAATCAGGACATTCAGTTCTTTGACACCGAGGTTCGAACATCTGATGTTGTTTTCGCCATCAATACAGATGCTGTCCTGGTCCAAGATGCTATTAGTGAGAAGGTGGAACACACCCTTGTACTCGGTAACTTCATTCACTACATGGCCACATTTGTTTCTGGTTTTGTTGTGGGTTTCACTGCGGTATGGCAATTGGCTCTAGTAACTCTTGCTGTAGTCCCTATGATAGCTGTGATTGGTGCCATTCACACGATCACCTTGGCTAAGCTCTCTGGAAAAAGCCAGGAATCTCTTTCTCAAGCTGGCAACATTGCAGAACAGACGGTTGCACAAATTCGAGTAGTGCTGGCCTTTGTTGGTGAGTCGAGAGCATTGAAGGCCTACTCATCTGCCTTGAAGGTTGGTCAGAAGCTTGGTTACAAAACTGGCTTTGCAAAGGGGATGGGATTGGGTGCCACTTACTTCGTTGTTTTCTGCTGTTACGCACTTCTGCTATGGTATGGAGGCTATCTGGTTAGGCACCACTACACCAACGGAGGACTTGCCATTGCAACCATGTTTGCTGTCATGATCGGTGGATTAGGTTTAGGCCAGTCTGCACCGAGCATGGCTGCATTTACTAAGGCCAGAGTTGCTGCTGCAAAAATCTTCCATATAATTGATCACAAACCGAGTATAGACCGAAACAGTGAATCTGGTTTGGAGCTAGAATCCGTGACAGGACTTGTGGAGCTAAAAAGTGTAGACTTTTCATATCCATCAAGACAAGATGTTCGGGTCCTCAATGATTTCTCCTTGAATGTGCCTGCTGGCAAGACTATTGCTTTGGTGGGTAGCAGTGGTTCTGGCAAGAGCACTGTTGTTTCCCTCATTGAAAGATTCTATGACCCATCTTCAGGACAAGTTCTGTTAGATGGGCATGACATAAAAACATTGAAACTTAGATGGCTGAGGCAGCAAATAGGACTAGTAAGCCAAGAACCGGCTCTATTTGCTACCACAATTCGAGAAAATATACTACTGGGCAGGCCTGATGCAGATCAGGGTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCTCATTCGTTCATCAACAAACTTCCTGAAGGCTATGAAACCCAGGTAGGAGAGAGAGGTTTGCAACTTTCAGGAGGACAAAAGCAAAGAATAGCAATAGCAAGGGCAATGCTGAAAAATCCAGCAATTCTTCTGTTAGATGAGGCAACAAGTGCACTGGACTCTGAGTCAGAAAAGCTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGTAGAACAACTCTTGTAATTGCTCATCGCCTATCCACTATTCGCAAAGCGGACCTTGTAGCTGTACTTCAGCAAGGACGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTTTCTAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATTGCGCATGAAACTGCTATGAGTAATGCCAGAAAAAGTAGTGCAAGACCTTCAAGTGCAAGAAACTCTGTAAGCTCACCCATAATTACTCGAAATTCTTCTTATGGCCGGTCACCATACTCGCACAGGCTGTCTGATTTCTCGACTTCTGATTTTAGTCTGTCCCTTGATGCATCACATCCAAATTACAGGCATGAAAGGCTTGCCTTCAAAGAGCAAGCGAGCTCTTTCTGGCGACTTGCGAAAATGAACTCTCCTGAATGGCTCTATGCATTAATTGGCTCTATAGGCTCTGTTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGCGTCTATTACAATCCAGACCATAGATTCATGATCCGACAGATAGAAAAGTACTGCTACTTGTTGATTGGGCTTTCATCGGCTGCACTTCTCTTCAACACATTGCAACACTTCTTTTGGGATATTGTTGGAGAAAATCTTACAAAGCGAGTGAGGGAGAAGATGCTCACTGCAGTGCTAAAGAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGGTAGGATAGCTGCAAGGCTCTCTCTCGACGCCAACAATGTCAGATCAGCCATTGGAGATAGAATTTCAGTAATTGTGCAGAACACTGCACTTATGTTAGTTGCCTGCACTGCAGGGTTTGTGTTGCAATGGCGCCTTGCCCTTGTCCTCGTAGCTGTCTTTCCTGTGGTTGTTGCTGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACATGGAAGCTGCTCATGCCAAGGCCACACAACTAGCAGGAGAGGCTATAGCCAATGTGAGAACTGTTGCAGCTTTCAATTCAGAAACAAAAATTGTTCGCCTTTTCACATCCAACCTTGAAATTCCACTAAAACGGTGCTTCAGGAGGGGACAAATATCTGGAAGTGGATATGGTATTGCTCAGTTTGCACTATATGCTTCCTATGCACTTGGTCTTTGGTATGCATCTTGGCTTGTGAAACACGGTATCTCTGATTTCTCTAAAGCAATTCGGGTTTTTATGGTCCTCATGGTCTCTGCTAATGGTGCTGCCGAAACATTAACCCTAGCTCCTGACTTCATCAAGGGAGGTCGAGCCATGAGGTCAGTCTTTGAGTTCCTTGACCGTAGAACTGAAATTGAGCCAGATGATCCTGATGCTACTCCTGTTCCTGATCGCCTTCGTGGTGAAGTTGAACTTAAGCATGTAGACTTCTCTTATCCTACTCGGCCAGATATGCCAGTTTTCCATGACCTTAGTCTTCGTGCAAGAGCAGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGTTCAATCATTGCACTTGTACAAAGATTCTATGATCCAACATCCGGAAGGGTCTTGATTGATGGGAAGGACATCAGGAGATACAATCTTAAGTCCCTGAGAAGGCACATTTCTGTAGTGCCTCAAGAGCCTTGCTTGTTTGCAACTACTATTTATGAAAACATTGCTTATGGTCATGACTCGGCTACTGAAGCTGAGATAATTGAGGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTTCCCTCCCAGATGGATACAAAACATTTGTCGGCGAGAGAGGAGTTCAACTATCCGGAGGACAAAAGCAACGAATAGCGGTTGCTCGTGCTTTTGTGAGGAAGGCTGAGCTTATGCTTCTCGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAGGAGGCACTAGACCGTGCCTCATTGGGTAAAACAACTATCATTGTTGCACACAGGTTATCAACTATCAGGAATGCCAATGTGATTGCTGTGATTGATGATGGGAAAGTAGCTGAGCAAGGTTCACATTCACATTTGTTGAAAAATTACCCCGATGGGATTTATGCACGAATGATTCAACTACAAAGGTTCACAAACACCCAAGTCATTGGCATGGCTTCAGGTTCAAGTTCTTCAACTAGACCAAAAGATGATGAAAGAGAAGGCTAA 4077 0.4408 MQMSQEEDSCSNTIEQWKWSEMQGLELHPHSQSPKPHQQQMDTSLSQQPNKDIDGAISNGGNGNGNNTSSISSSSSGEKKKTKAESVPPIGFVKLFRFADGLDCILMAIGTVGAIVHGCSLPIFLRFFADLVNSFGSNANDLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVLVQDAISEKVEHTLVLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTITLAKLSGKSQESLSQAGNIAEQTVAQIRVVLAFVGESRALKAYSSALKVGQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFHIIDHKPSIDRNSESGLELESVTGLVELKSVDFSYPSRQDVRVLNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQGEIEEAARVANAHSFINKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGRVSEIGTHDELFSKGENGVYAKLIKMQEIAHETAMSNARKSSARPSSARNSVSSPIITRNSSYGRSPYSHRLSDFSTSDFSLSLDASHPNYRHERLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRFMIRQIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESGRIAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDMEAAHAKATQLAGEAIANVRTVAAFNSETKIVRLFTSNLEIPLKRCFRRGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFEFLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMPVFHDLSLRARAGKTLALVGPSGCGKSSIIALVQRFYDPTSGRVLIDGKDIRRYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASLGKTTIIVAHRLSTIRNANVIAVIDDGKVAEQGSHSHLLKNYPDGIYARMIQLQRFTNTQVIGMASGSSSSTRPKDDEREG 1358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0109 1358 ProSitePatterns ABC transporters family signature. 1231 1245 IPR017871 GO:0005524
Lal20g0109 1358 MobiDBLite consensus disorder prediction 683 708 - -
Lal20g0109 1358 CDD ABC_MTABC3_MDL1_MDL2 1092 1331 - -
Lal20g0109 1358 Gene3D - 1083 1338 IPR027417 -
Lal20g0109 1358 Gene3D - 435 700 IPR027417 -
Lal20g0109 1358 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 402 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g0109 1358 CDD ABC_6TM_Pgp_ABCB1_D2_like 758 1074 - -
Lal20g0109 1358 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 107 1335 IPR039421 -
Lal20g0109 1358 SMART AAA_5 1119 1311 IPR003593 -
Lal20g0109 1358 SMART AAA_5 464 650 IPR003593 -
Lal20g0109 1358 CDD ABC_MTABC3_MDL1_MDL2 437 676 - -
Lal20g0109 1358 MobiDBLite consensus disorder prediction 21 83 - -
Lal20g0109 1358 ProSitePatterns ABC transporters family signature. 576 590 IPR017871 GO:0005524
Lal20g0109 1358 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 769 1056 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g0109 1358 Pfam ABC transporter 455 604 IPR003439 GO:0005524
Lal20g0109 1358 Pfam ABC transporter 1111 1259 IPR003439 GO:0005524
Lal20g0109 1358 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 107 1335 - -
Lal20g0109 1358 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1092 1328 IPR003439 GO:0005524
Lal20g0109 1358 SUPERFAMILY ABC transporter transmembrane region 756 1079 IPR036640 GO:0005524|GO:0016021
Lal20g0109 1358 Pfam ABC transporter transmembrane region 107 386 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g0109 1358 Pfam ABC transporter transmembrane region 770 1039 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g0109 1358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1083 1331 IPR027417 -
Lal20g0109 1358 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 673 IPR003439 GO:0005524
Lal20g0109 1358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 676 IPR027417 -
Lal20g0109 1358 SUPERFAMILY ABC transporter transmembrane region 94 421 IPR036640 GO:0005524|GO:0016021
Lal20g0109 1358 MobiDBLite consensus disorder prediction 32 77 - -
Lal20g0109 1358 CDD ABC_6TM_Pgp_ABCB1_D1_like 107 410 - -
Lal20g0109 1358 Gene3D ABC transporter type 1, transmembrane domain 154 1065 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0109 Lal-Chr20 706268 712706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0109 80 1353 Calmodulin-binding Proteins AT2G36910 87.373 0.0 2280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0109 20 706268 712706 Lal20g0109 20 706268 712706 ECH