Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0105 ATGGCGAACCAACCTGAATCCTCTGATGCTAATAAGGGAACCAAGAGAGATTTCAGTACCGCCATTTTGGAACGGAAGAAAGCGCCGAATCGTTTGGTTGTTGACGAATCCATCAACGATGACAACTCAGTTGTCGCACTTCACCCTGATACCATGGAGAAGCTCCAACTTTTCCGTGGGGACACCATCTTGATCAAGGGAAAAAAAAGGAAAGATACAGTCTGTATTGCACTTGCTGATGACACATGTGAGGAACCAAAAATAAGAATGAACAAGGTTGTGAGAAACAACCTTAGGGTTAGGCTCGGTGATGTTGTTTCGGTGCATCAGTGTCCTGATGTCAAATATGGAAAGAGAGTCCATGTTCTTCCTGTGGATGACACTATTGAAGGGGTGACAGGGAACCTCTTTGACGCATACATAAAACCTTATTTCCTGGAGGCATATCGACCAGTGAGGAAGGGTGACTTCTTCCTTGTGAGAGGGGGGATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGACCCTGGTGAGTACTGTGTTGTTGCCCCGGACACTGAGATTTTCTGTGAAGGAGAGCCTGTTAAAAGGGAAGATGAGAATCGATTAGATGAGGTTGGCTATGATGATGTTGGTGGTGTACGAAAGCAGATGGCACAGATTCGGGAGCTAGTGGAACTACCACTGAGGCACCCTCAATTGTTCAAGTCTATTGGTGTTAAGCCACCTAAAGGAATTCTGCTGTATGGACCCCCGGGGTCTGGCAAGACACTTATTGCTCGTGCAGTGGCAAATGAAACTGGTGCCTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCAAAGTTAGCGGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCAGAGAAGAATGCTCCATCCATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGAGGGAGAAGACTAATGGTGAAGTTGAAAGGAGGATTGTTTCCCAGCTATTGACCCTCATGGATGGACTTAAATCACGAGCACATGTAATTGTTATTGGAGCCACAAATCGTCCCAATAGCATTGACCCTGCTCTTAGGAGGTTTGGAAGGTTTGATCGAGAGATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAGGTTCTTCGAATTCATACTAAGAATATGAAGCTTGCTGAAAATGTTGATTTAGAAAAGATTGCCAAGGACACCCATGGCTATGTTGGTGCTGATCTAGCTGCTCTGTGTACTGAAGCTGCACTTCAATGCATCAGAGAGAAAATGGATGTAATTGACTTGGAAGACGAGTCAATTGATGCGGAGATATTGAACTCGATGGCAGTGACTAATGATCATTTTCACTCTGCTCTTGGTTCTAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTCGAAGTGCCCAACGTTAGCTGGGATGACATTGGTGGCCTTGAAAATGTTAAGAGAGAGCTCCAAGAGACCGTTCAATATCCAGTGGAACACCCTGAAAAGTTTGAGAAGTTTGGAATGTCGCCTTCAAAGGGGGTTCTTTTCTACGGTCCTCCTGGGTGTGGCAAAACCCTTTTGGCGAAAGCTATTGCCAATGAATGTCAGGCCAACTTCATCAGTGTCAAAGGTCCTGAGCTACTGACAATGTGGTTTGGAGAAAGCGAGGCTAATGTGAGGGAAATTTTTGACAAGGCACGTGGTTCTGCTCCATGTGTCCTGTTCTTTGATGAACTTGACTCCATAGCAACACAGAGAGGCGGCAGTTCAGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAACCAACTGCTTACGGAAATGGATGGGATGTCAGCAAAGAAGACTGTGTTCATCATTGGGGCCACGAATCGACCTGACATTATAGACTCTGCTCTTCTACGTCCAGGCCGTCTAGACCAGTTGATTTATATCCCACTCCCAGATGAGGATTCCCGTCATAATATATTTAAAGCTTGCTTGAGAAAATCTCCAATCTCGAAAGATGTCGACATCAGAGCCCTTGCGAAGTATACTCAAGGCTTTAGTGGTGCTGATATTACTGAAATTTGCCAGCGTGCATGCAAGTATGCCATTAGAGAAAACATTGAGAAGGACATTGAGAGAGAAAGGAGGAGAAGCGAGAACCCGGAGGCCATGGAAGAGGATGTTGAAGACGAGGTAGCAGAAATCAAGGCAGCTCATTTTGAGGAATCAATGAAGTATGCACGGAGGAGTGTAAGCGATGCTGACATTCGCAAGTACCAGGCATTTGCCCAAACATTGCAGCAGTCAAGAGGGTTTGGAAGCGAGTTCAGGTTTGCCGATGCCAGCTCTGGTGGTGGTGCCACTACTGCTGCATCTGATCCATTTGCATCTGCTGGTGGAGCCGATGAAGATGATCTTTACAGTTAG 2430 0.4576 MANQPESSDANKGTKRDFSTAILERKKAPNRLVVDESINDDNSVVALHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHVLPVDDTIEGVTGNLFDAYIKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAENVDLEKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNDHFHSALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGGSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHNIFKACLRKSPISKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADASSGGGATTAASDPFASAGGADEDDLYS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0105 809 ProSitePatterns AAA-protein family signature. 622 640 IPR003960 GO:0005524|GO:0016887
Lal20g0105 809 Pfam ATPase family associated with various cellular activities (AAA) 519 652 IPR003959 GO:0005524|GO:0016887
Lal20g0105 809 Pfam ATPase family associated with various cellular activities (AAA) 246 375 IPR003959 GO:0005524|GO:0016887
Lal20g0105 809 Gene3D - 211 375 IPR027417 -
Lal20g0105 809 Pfam Cell division protein 48 (CDC48), N-terminal domain 31 112 IPR003338 -
Lal20g0105 809 Gene3D - 377 468 - -
Lal20g0105 809 Gene3D - 114 210 - -
Lal20g0105 809 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 36 768 IPR005938 GO:0016787
Lal20g0105 809 PANTHER AAA-FAMILY ATPASE 7 786 - -
Lal20g0105 809 CDD AAA 212 375 - -
Lal20g0105 809 SUPERFAMILY ADC-like 28 111 IPR009010 -
Lal20g0105 809 Gene3D - 656 764 - -
Lal20g0105 809 MobiDBLite consensus disorder prediction 1 21 - -
Lal20g0105 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 467 IPR027417 -
Lal20g0105 809 Gene3D - 8 113 - -
Lal20g0105 809 SUPERFAMILY Cdc48 domain 2-like 113 205 IPR029067 -
Lal20g0105 809 SMART CDC48_N_2 31 114 IPR003338 -
Lal20g0105 809 Pfam AAA+ lid domain 398 440 IPR041569 -
Lal20g0105 809 Pfam AAA+ lid domain 674 714 IPR041569 -
Lal20g0105 809 CDD AAA 485 652 - -
Lal20g0105 809 ProSitePatterns AAA-protein family signature. 346 364 IPR003960 GO:0005524|GO:0016887
Lal20g0105 809 SMART AAA_5 515 654 IPR003593 -
Lal20g0105 809 SMART AAA_5 242 378 IPR003593 -
Lal20g0105 809 PANTHER - 7 786 - -
Lal20g0105 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 765 IPR027417 -
Lal20g0105 809 Pfam Cell division protein 48 (CDC48), domain 2 133 196 IPR004201 -
Lal20g0105 809 Gene3D - 469 652 IPR027417 -
Lal20g0105 809 SMART CDC48_2_2 131 197 IPR004201 -
Lal20g0105 809 MobiDBLite consensus disorder prediction 781 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0105 Lal-Chr20 679488 684595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0105 448 711 Calmodulin-binding Proteins AT3G56690 47.727 1.58e-79 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0105 20 679488 684595 Lal20g0105 20 679488 684595 ECH