Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0102 ATGAAGTGTTTTATATTCCAGTATGGAGAGAAGAAAGGTGAAGCTAAAGGCTTTCAACCTATATCGGGTCGGTCAGACAATTCCACAAATGTTGAGGCCGATGTTAGAGGATCCGGTCCTGAGTTCAATTCTCAGGAAGTCTCAGACAATGCCAGCAATGAATCCCTCAGGAGAAGTTCACCTAGTTTGTCACAAAGACCTAGCAACCTTAGAGTGTTTACTGTATCGGAACTGAAATCGGCCACAAAGAATTTCAGTCGATCTGTCATGATTGGAGAGGGTGGGTTTGGGTGTGTCTACCAAGCTTTGATCAAAAGCTTAGAAGACCCATCCCAAAAAAGTGAAGTTGCAGTTAAACAACTTAGTAAAAGAGGAATGCAGGGGCATAGGGAATGGGTGACAGAAGTGAACGTTTTGGGCATTGTTGAGCATCTGAATCTTGTGAAACTAGTGGGATACTGTGCTGAGGATGACGAACGAGGAATCCAGCGGCTTCTGATCTATGAATACATGCCAAACAGAAGTGTAGAACACCATTTATCACACCGATCAGAAACTCCTCTGTCATGGGATAGGAGACTAAAAATAGCCCAAGATGCAGCTCGCGGATTAACATATCTGCATGAGGAAATGGATTTTCAGATCATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGATGAACAATGGAATGCAAAACTATCAGACTTTGGGTTAGCAAGATTGGGACCGTCGGATGGACTAACTCACGTCTCAACAGCGGTTGTAGGAACACTAGGATATGCAGCTCCTGAATATCTTCAAACCGGACGTCTCACATCAAAGAATGATGTATGGAGCTACGGTGTGTTCCTTTTTGAACTCATCACTGGCAGGCGTCCTTTAGATCGAAATCGGCCGAGGGGTGAACAGAAGCTGTTGGAATGGATAAAGCCATACCTAGCAGATGCAAAGAAATTTGAACTCATATTGGATCCAAGACTTGACAACAAACAAGTTGTAAAATCAGCCCAGAGACTTGCAGTGATAGCTAACTGGTGTTTGGTTAAAAATCCGAAGAGTCGCCCGAAGATGAGTCAGATATTGGAAATGGTGAATGGACTAGTAGAATCTTCATCTGGTGCAAGTCCACACTTACCCTTCAAGAGTTTGCCAAAATTGGAAGCTTCACAAGACACTCAAATATTAAAGAACAAGAAAAGGACCATGGATCAGAAACCTGGGGTAAGTAATTGGTTTGTTAGGATATGGAGACCAAAACTTTTAAGATCCTCTTAG 1281 0.4254 MKCFIFQYGEKKGEAKGFQPISGRSDNSTNVEADVRGSGPEFNSQEVSDNASNESLRRSSPSLSQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYQALIKSLEDPSQKSEVAVKQLSKRGMQGHREWVTEVNVLGIVEHLNLVKLVGYCAEDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLSWDRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTLGYAAPEYLQTGRLTSKNDVWSYGVFLFELITGRRPLDRNRPRGEQKLLEWIKPYLADAKKFELILDPRLDNKQVVKSAQRLAVIANWCLVKNPKSRPKMSQILEMVNGLVESSSGASPHLPFKSLPKLEASQDTQILKNKKRTMDQKPGVSNWFVRIWRPKLLRSS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0102 426 MobiDBLite consensus disorder prediction 15 65 - -
Lal20g0102 426 Gene3D Transferase(Phosphotransferase) domain 1 171 378 - -
Lal20g0102 426 ProSitePatterns Protein kinases ATP-binding region signature. 91 119 IPR017441 GO:0005524
Lal20g0102 426 ProSiteProfiles Protein kinase domain profile. 85 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0102 426 PANTHER OS01G0588500 PROTEIN-RELATED 15 420 - -
Lal20g0102 426 CDD STKc_IRAK 91 369 - -
Lal20g0102 426 Gene3D Phosphorylase Kinase; domain 1 65 170 - -
Lal20g0102 426 PANTHER KINASE 1B 15 420 - -
Lal20g0102 426 Pfam Protein kinase domain 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0102 426 MobiDBLite consensus disorder prediction 41 65 - -
Lal20g0102 426 SUPERFAMILY Protein kinase-like (PK-like) 60 366 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0102 Lal-Chr20 656688 659572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0102 1 404 Glycoside Hydrolase AT3G07070 39.663 9.52e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal20g0102 Pkinase 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0102 - - gmx:100813060 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0102 20 656688 659572 Lal20g0102 20 656688 659572 ECH
Lal20g0102 20 656688 659572 Lal13g1486 13 14363451 14369394 PCT