Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0100 ATGAGAATGAACATTAAATCGGAACCTCACTTTGTATTGTTCATCTATGCAGCATGCTCCAGGCTGAGTACCTGTAATCCAAACACATCAACCCAAAATATGCATGCTTATGGAGCTCTCTTTATTATTGCTTTGAGTACTCTCCTGATCTTCATTTATAACTGTTCGGATCAAGTTCTAGCTACTAGAGAAAGAAGGCAAGCTAAATCCAGAGAAGCTGCAGCAAGACATGCAAGAGAAACTGCACAAGCTCGTGAAAGGTGGAAAATAGCGAAAGGTGTTGCTAAGAAGAAAACATTTGATTCGTTGTCACGCACATTTTCACGTCGAAAATCAACTAAGCAAGGAGATCTGGCAAAGGGTATTGGTAAACCAGGTGATACTTTTTTGCCAGCAACGCCTCCAGATGCTGCAAGCTCATCTGAGCCTTCAGGTTCAAAAGGCAACAAAAAGGAACCTAGCAACCTTAGTAAAATGATGAACTCGCTCGAGAATGATCCAAATAGCCAAGAAGGATTTGATCTTCAGATTGGAGATAAGAATGTTAAAAAGAATATGCCAAAAGGGAAACAGTTACATACACATAGCCAAATTCTAAGGTATGCTTATGGACAGATTGAAAAGGAAAAAGCTCAGCAAGAGAATAATAAGAACTTGACATTCTCAGGAGTGATTTCAATGGCTACTGAAGGTGAGGTTAGGACAAGGCCTGTGATTGAGATAGCTTGCAAAGATCTAACTCTCACTTTGAAAGGGAAAAACAAACGTATACTGAGGTGTGTGAATGGTAAAATCATGCCGGGTAGAGTTTCTGCTGTGATGGGACCCTCAGGAGCTGGAAAGACAACATTTCTTTCAGCTATTGCAGGAAAAGCAAGAGGGTGTACTATGACAGGCCAAATTCTAGTTAATGGAAAACAAGAATCCATTCACTCATATAAGAAGATTACTGGTTTTGTGCCCCAAGATGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTAAGGTTCAGTGCAAGATGCAGGCTACCAGATGACATGCCAAAACCAGACAAGGTTCTAATAGTTGAAAGAGTAATTGAGTCTTTGGGTCTTCAAAACATAAGGGACTCTCTAGTTGGAACAGTAGAGAAGAGAGGTATATCTGGAGGGCAAAGAAAAAGAGTAAATGTAGGGCTTGAGATGGTGATGGAACCTTCCTTATTAATCTTAGATGAGCCTACAACTGGTTTGGACAGTGCATCTTCTAGTTTACTGCTTAAAGCACTCAGACGTGAAGCTCTTGAAGGGGTTAACATTTGCATGGTACTTCATCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAGTATTCCTAGCCAAAGGTGGCCTTACTGCATATCATGGTCCAGTTAAAAAGGTAGAAGAATATTTTGCAGGCATTGGAATCCCAGTGCCGGATCGTGTGAATCCACCCGACCATTTTATTGACATTCTTGAAGGTTTAGTGATACCAAGTTCAGGTGTAACTCATGAACAACTTCCTGTCCGATGGATGCTTCATAATGGATATCCAGTACCACATGACATGCTTCATTTTGCGGATCAAATTGCTGCCTCTTCATCTGGTGCACATGTCCCTGAAGCAACAAAGGCTAATGATGAACCTGTTGATCAATCCTTTGCTACAGAATTTTGGGCTGATATGAAGAGTAATGTTCAGATCCAAAGAGATCATGTAGAAGCAATCTTCTTAAGAACAAAGGACTTATCTAACCGAATAACTCCAGGTGTTAGCAGACAATTTAGATACTTTGTTGGACGGATTGGCAAGCAGCAGTTGAGAGAAGCAAAATTAATAGCAGTGGACTATCTTCTTTTATTAGTTGCTGGTGCTATCTTAGGAACTCTTACTAAAGTGAATGATGAAACATTTGGGTCCCTTGGCTATACATATACTATCATTGCTGTTTCCCTACTTTGCAAGATTGCAGCTCTGAGATCATTTTCTTTGGATAAATTACATTACTGGAGGGAAAGTGCGGCCGGGATAAGCAGTCTGGCTCATTTTCTAGCCAAAGATACAATTGATCTTTTCAATACAATTGTCAAACCTTTGGTCTATCTGTCCATGTTCTACTTTTTTAGCAATCCAAGATCAAGCTTCGGCAGTAACTACGCAGTTTTGCTATGTCTAGTGTACTGTGTGACTGGCATGGCTTATGCATTAGCCATTTATTTTGAGCCTGGTCCTGCACAACTGTGGTCAGTGCTTGTTCCTGTTGTTATGACTCTCATTGCAAGTCAGAACAGAGATACTCCATTTATGAAGATCCTAGTAAAATTGTGCTATCCAAAATGGGCTTTGGAGGCATTTATCATTGCAAATGCTGAAAGGTTTGATCTCTTTCCCCTTTCTTTTGATGCAGTACTGAAGTAA 2427 0.4021 MRMNIKSEPHFVLFIYAACSRLSTCNPNTSTQNMHAYGALFIIALSTLLIFIYNCSDQVLATRERRQAKSREAAARHARETAQARERWKIAKGVAKKKTFDSLSRTFSRRKSTKQGDLAKGIGKPGDTFLPATPPDAASSSEPSGSKGNKKEPSNLSKMMNSLENDPNSQEGFDLQIGDKNVKKNMPKGKQLHTHSQILRYAYGQIEKEKAQQENNKNLTFSGVISMATEGEVRTRPVIEIACKDLTLTLKGKNKRILRCVNGKIMPGRVSAVMGPSGAGKTTFLSAIAGKARGCTMTGQILVNGKQESIHSYKKITGFVPQDDIVHGNLTVEENLRFSARCRLPDDMPKPDKVLIVERVIESLGLQNIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKKVEEYFAGIGIPVPDRVNPPDHFIDILEGLVIPSSGVTHEQLPVRWMLHNGYPVPHDMLHFADQIAASSSGAHVPEATKANDEPVDQSFATEFWADMKSNVQIQRDHVEAIFLRTKDLSNRITPGVSRQFRYFVGRIGKQQLREAKLIAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTIIAVSLLCKIAALRSFSLDKLHYWRESAAGISSLAHFLAKDTIDLFNTIVKPLVYLSMFYFFSNPRSSFGSNYAVLLCLVYCVTGMAYALAIYFEPGPAQLWSVLVPVVMTLIASQNRDTPFMKILVKLCYPKWALEAFIIANAERFDLFPLSFDAVLK 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0100 808 CDD ABCG_EPDR 239 465 - -
Lal20g0100 808 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 18 798 - -
Lal20g0100 808 MobiDBLite consensus disorder prediction 102 117 - -
Lal20g0100 808 SMART AAA_5 267 459 IPR003593 -
Lal20g0100 808 Pfam ABC transporter 260 409 IPR003439 GO:0005524
Lal20g0100 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 464 IPR027417 -
Lal20g0100 808 MobiDBLite consensus disorder prediction 134 172 - -
Lal20g0100 808 MobiDBLite consensus disorder prediction 102 172 - -
Lal20g0100 808 Pfam ABC-2 type transporter 439 797 IPR043926 GO:0140359
Lal20g0100 808 ProSitePatterns ABC transporters family signature. 382 396 IPR017871 GO:0005524
Lal20g0100 808 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 18 798 - -
Lal20g0100 808 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 241 482 IPR003439 GO:0005524
Lal20g0100 808 Gene3D - 231 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0100 Lal-Chr20 645933 650082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0100 268 461 Calmodulin-binding Proteins AT2G36910 28.713 4.04e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0100 20 645933 650082 Lal12g0827 12 6656068 6664978 ECH
Lal20g0100 20 645933 650082 Lal13g1009 13 7408439 7416085 ECH
Lal20g0100 20 645933 650082 Lal20g0100 20 645933 650082 ECH
Lal20g0100 20 645933 650082 Lal2g0046 2 267950 273348 ECH
Lal20g0100 20 645933 650082 Lal9g0066 9 399492 404939 ECH