Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal20g0097 | ATGAAATTTGAGACTCTTGTTACACAAGATGGTGGAGGACATTCCAATTTTTGGCGTACCGAGGAATTGACTGAAGAATATAAAGATAGTACACAAGCAGATCCTCTTATGAAAGATGATGGAAAAGTTTTATGTTACAATTGTTTGCATGGTGGAATGCTCTTGTGCTGCTGTGGAAAAGGATGTCGAAGGAGGTACCATTCCTCTTGTTTGGATCCTCCTCTCAAATATACTGCTCCAAGATTTTGGTACTGTATCTGGTGTGTTAAGAAAATGGTAGAGCTGGGCGTGCATTCTGTCTCTGAAGGGGTGGAATCTGTCTTGGATTCTAGAGAAGTGGTTTCAAAAGATAAAGTGATGCAAAGGGAGTACTTTGTGAAGTATCAGGGCCTTGCTCATGCTCACAACTGCTGGATTCCAGAAACACTGATGCTTCTTGAAGCTCCAAAGCTTTTGGCAAAGTTTAAGAAGAAAACCCAGGTTATCAAGTGTACAAGAGAGTGGAGTATACCTTACCGCTTGCTGCTAAAAAGGAAATTTATATTGCCAAAGCGAAATGATGAGCATTTAAATGGGGAGGATGACTGCTGTTATCAATGGCTTGTAAAATGGACCAGTCTTGGTTATGATCATGTTTCATGGGAGTTAGATAATGCTTCGTTTATGACATCATCTGAAGGCATAAAACTCATAGAAGAGTACGAATGTCGTAGAACGATAGCAAACAGACTGTCAAAACCTTTTGAAACGAATAAGGGGAGAGAAGCTTCCTTCACTGAATTACTAGTTTTGGCATGTGGAGATTCACCAGGGTTTTATAACCAATATTTAAGTTATGTGAACAAGCTTCACATGTGTTGGAACAAAGGTCAGAGTGCTCTTATTGTAGACGACCATGTTGACCAGGAGCGGGTTATGAAGGTGATTCTGTTCATATTATCTTTGCATTGTATTGTGGAGAGGCCTTTTCTCATCATCTCAGGTTCTACTGCCCTCTCTGTGTGGGAAACAGAGTTCTTACATCTGGCACCATCTGTCAATCTTGTAGTTTACAAAGGAGACAAAAATGCAAGAAGTAGCATAAGGGAATTAGAGTTTTATAATGATGATGGTAGCATCTTATTCCAAATACTATTAGTATCTTCTGATATTGTCGTTGAGGACTTAGTTGCACTAAGTTGCATTCCATGGGAAGTGATAATAATTGATGAATGCCAGAGACCCAAAAATTTTAAACACTTGGACAGTATCTCGATTCTGGCAGCTGAGATGAAGCTCATTCTTGTTAGTGGACAAATCAAGGATGATCGAGCTGATTTTATCAAATTACTTTCATTCCTTAAGTCTGGACATCATGGATTAGATGTGCCTCCTGTGGAGACCTTCTTCTCCGCTAGCATTTCCGATTTGAAGAGAGAATTGGAAAAATATGTTGTATTTAGGTCCACTAGGTTTGTAGAGTACTGGGTTCCTGCCCCGCTTTCTAGTTTGCAGCTCGAACAGTATTGTTCAATGCTGCTTTCACACTCAACATTGTTATGCTCAGGCCAAAAGTCTGACAATGTTGACGCTCTCCATGATCTTATCATCTCAACAAGGAAGTGCTGTGGCCACCCTTATCTTCTGGACCAGTCACTGCACAGTTTTGTCTCTAAAGGCCTTCCTATTGAAGAGTACTTAAATATTGGAATTAAAGCAAGTGGGAAGTTGCAGCTTCTTGAAAAAATCCTTTTGGAAGCAAGAAGTAGGGGACTAAGAGTGATAATACTATTTCAGTCAACAGCTAGTGGTTCTGCATCAATAGGAGATATTTTAGATGATGTTCTCTGCCAGAGATTTGGTAAAGATTGCTATGTACGGTATGATAGACTGTATAGACCATCAATGAAGCAAACTGCCCTAGACACATTTAACGACAGGGAAAGTGGAAAATTTGTCTTCTTGATTGAAAACCGTGCTTGCCTACCTAGTGTTAAACTTTCCTCAGTGGATACTGTTATATTATTTGATAGTGATTGGGATCCACATAATGACCTCAGAGCCTTACACAAGATGTCTATTAGCTCCCAGCGCACGAAGGTAACTGTTTTCAGATTGTACTCACCTTTCACTGTTGAAGAAAGGGTTTTAATACTTGCAAAAGAGGGTATAACTCTTGATAGCGACATGCAGTTGATTACCCAGAGTACTTTTCTCAACCTGCTAAAATGGGGTGTCTCATATCTGTTCAATAAGCTTGATGACTTGCATTGTAGTGGGTCCTCAGTGTCTGCTGCAGACATCTCTACTGATGAGTCACTTCTAAATGATGTAATCGGTGAATTACTATCTCGGCTGGTCTATAGCAGTGGTGACACTGATTGTCATGAATGGTCATTCATATTCAGAGCACAACTAAATGGAGGGGAATTTGGCAAGAACATTTTATTGCCAGGAGAAAGAGTTATGAAGAAATCAGATAATGGACCACATATATTTTCCTGGAGTGATCTCCTTAACGGAAGACATCCTCGATGGAATTTTTTGTCTGTTTCATCTCAAAGGACCAGGAAAACAGTCAAATATTTTGACCACATTCAAAAAGAATCTGAGAATTTAAGTGATCCCATTATAAGCGAGAGGAAAAAAGTGTCAAAGACTAATGTCAATCCCAATAGGAGGAAACTATCCAAGGATGATGTTCCTGAGAGGAGGAAAGTGACCAAGGGTAGTGTTGATCCCAATAGGGGGGAAGTGTCCAAGGATTGCGCTGATCCCAAAAAGAGGAAATTCTCTTCCAAGTATAACATTGATTTGAAGAGAAGGAAAGTTTCCAAGGATATTGTTCACTCAAAATATCTGAAAACAAGGCTTGAGAAAAAGAAGAAATCAAGTGATGTTAGAAAGGCAAGCAAAATGAGCGGTACTGCTGAAGAAAATAAACTGCATGACATACCAGAGAGTGCTGAGCTATTGCCAAAACCAGATGTATCAGTTCTATGTGATGTTCTACATCTTCCGAAGAATGTCAAGGCCATTGCCATGAGGATTCTTGAGCACATATTTGAACATTACAACATCAGTTGCGAGGACAGTTCTACCTCACAGGCATTTAAAATATCTGTGTGTTGGCTAGCAGCTTCTTTCTTGAAACACAAGATTGACAGGAAAGATTCTCTTGCACTTGCAAAACTGTATTTGAATTTCAATTGCAAGGAAGAGGAAACCACTGAAGTTTACTCTGAACTGCGGAAGTTTAAGCAGGAAATTTCAAGTTGTTTACAAAATGGACTTCATGTTGAGAAATGCAACGTAAATAGTGCTTCAGACTCTGAGATACCTCAGCTGAAAGATTTGTCAGGTGAGAAGCAGAAGGGTTGTCAGGGTCCTTGTCTTTCAAATCTTTTAGAATCTGCCACAAACAAACATGAACTTCAGAGAAAATCTCCCACAACAGTGCTATCTTCACAAGACATAGCTTATACAGAAAATTTTCATAGCAGCCCTTCTATGGCTCATGAAACTTTCCTACCTCAAAGTACATCTTGTACTTTGCCTTTGGAAACTGATGCCATGGAATTGGAATCTGGTGAAGATGACAAAATGAATGATATGTCCTCGGTAGCTGCAGAAGTTTCATACCCTGAGCACCAGAATAAAATCCCAAATTCAAGTAATAATCCTCACAATGTCAGTCATGTTACATGTTCTTCTGAAAGACAAATTTCTATTAGAAGTACAGAGATTTCCGAGTTTGATGGCAAAGATTCTGAAGGTCTTCATATTTTAGTGAACGAAGTGGTTGCTGGTGATAATTCTATAAATATGGCTAGGCATCCTGCACAACTTGACAGTGTTGAGACAGATGCTTTAACTTGCGATATCACTGAGCAACAGAATAAAGTCCCAAATTCAAGTAATAATCCTCATAATGTCATTCCTGTTACAAGTTCTTTGGAAAGACAGGGTCCTATTATAAGTACAGAGATTGCTGTGTCTGACTTCAACGTTTCTGAAGGTCCTCATATTTTTGTGAACGAAGTGGTTGCTGGTGACAATTATATGACTATTCATCCTGCACAACTTGACAGTGTTGAGACAGATGCTTTAACTCATGATAGTATTGCTGTTCCTGATTTCAGACAGAGTGACAATGTATTGGGTCCTGTATGTGGTCAGTCGACTACCTCGGAGTTTGCTGAAACCACCTTACCCTTTATGCAACCGTCATATGCAAACTCGTCACCATTGCCTCAGATGACTACATCTTCTATTCCATCTTTTTTGGAGGACAATTCAACAAGTACCATCATGCCTCTAGAGGAGGAAGTACTATTGCAAGCACTGAATGACGCAGCCGAAACAGTTAACTCTTCCCTTATTCCACCCGTGACACAGCAACCCTGCCCCACTGAGCCCTTGAATGAAAATGCAATACATGTTCCTCACAGTATTTCCAATCCTGGATATATGAACAATCGTTCTTATCAAGCTCAGTATGCGACATCTGAAACACTCGACACCACATACCCAGATCCAATGCTAATTGAAATGGAGAGAATAAAGAAGTTGAAAGAAGAAGTCTCCAAGATTCATGAGAAAAAAACATTGCAGCTCCAATCTGATTACCAAAAGGAGGTTGAAAAGTTACGTGAAAGGTACACTATGTTGATTCAGAATGCTGATACTGCAGTAGCACTAAAGATTGAGGAACTAGAGATGCAATGTAAAATAGCTTGTATGAATAAGGCATTGGCAGAGGCTTGGGTTGATGCAGAATACATAGATCAAGTGCCAACACCTAGCTCCTCAAGTTCTCATGTTCCAAAACACCATACATCTCGTATGCGTGCTCAAGGATTTCGACAATGTATAGCAGGTCCACCCATAATGCACCCAACCTTATCAACTCCAATGATGGGGGTTCATCCTTCAGGAACCATTCCACAAATCAGCCCAGTTAGAACATGCTTTAATCCCATGACTCAATCCTTCAGAAATCTTCATGATGATGGCAACAGTTTCTTGGCCCAGGCCCGAGCCTCTGTAGCCGCCTCATCTGATCCAGTACCTCTCATGCCTAATGAAAATAGTGGACTACCAGATCAACTGCTATACCAGTGA | 5103 | 0.4011 | MKFETLVTQDGGGHSNFWRTEELTEEYKDSTQADPLMKDDGKVLCYNCLHGGMLLCCCGKGCRRRYHSSCLDPPLKYTAPRFWYCIWCVKKMVELGVHSVSEGVESVLDSREVVSKDKVMQREYFVKYQGLAHAHNCWIPETLMLLEAPKLLAKFKKKTQVIKCTREWSIPYRLLLKRKFILPKRNDEHLNGEDDCCYQWLVKWTSLGYDHVSWELDNASFMTSSEGIKLIEEYECRRTIANRLSKPFETNKGREASFTELLVLACGDSPGFYNQYLSYVNKLHMCWNKGQSALIVDDHVDQERVMKVILFILSLHCIVERPFLIISGSTALSVWETEFLHLAPSVNLVVYKGDKNARSSIRELEFYNDDGSILFQILLVSSDIVVEDLVALSCIPWEVIIIDECQRPKNFKHLDSISILAAEMKLILVSGQIKDDRADFIKLLSFLKSGHHGLDVPPVETFFSASISDLKRELEKYVVFRSTRFVEYWVPAPLSSLQLEQYCSMLLSHSTLLCSGQKSDNVDALHDLIISTRKCCGHPYLLDQSLHSFVSKGLPIEEYLNIGIKASGKLQLLEKILLEARSRGLRVIILFQSTASGSASIGDILDDVLCQRFGKDCYVRYDRLYRPSMKQTALDTFNDRESGKFVFLIENRACLPSVKLSSVDTVILFDSDWDPHNDLRALHKMSISSQRTKVTVFRLYSPFTVEERVLILAKEGITLDSDMQLITQSTFLNLLKWGVSYLFNKLDDLHCSGSSVSAADISTDESLLNDVIGELLSRLVYSSGDTDCHEWSFIFRAQLNGGEFGKNILLPGERVMKKSDNGPHIFSWSDLLNGRHPRWNFLSVSSQRTRKTVKYFDHIQKESENLSDPIISERKKVSKTNVNPNRRKLSKDDVPERRKVTKGSVDPNRGEVSKDCADPKKRKFSSKYNIDLKRRKVSKDIVHSKYLKTRLEKKKKSSDVRKASKMSGTAEENKLHDIPESAELLPKPDVSVLCDVLHLPKNVKAIAMRILEHIFEHYNISCEDSSTSQAFKISVCWLAASFLKHKIDRKDSLALAKLYLNFNCKEEETTEVYSELRKFKQEISSCLQNGLHVEKCNVNSASDSEIPQLKDLSGEKQKGCQGPCLSNLLESATNKHELQRKSPTTVLSSQDIAYTENFHSSPSMAHETFLPQSTSCTLPLETDAMELESGEDDKMNDMSSVAAEVSYPEHQNKIPNSSNNPHNVSHVTCSSERQISIRSTEISEFDGKDSEGLHILVNEVVAGDNSINMARHPAQLDSVETDALTCDITEQQNKVPNSSNNPHNVIPVTSSLERQGPIISTEIAVSDFNVSEGPHIFVNEVVAGDNYMTIHPAQLDSVETDALTHDSIAVPDFRQSDNVLGPVCGQSTTSEFAETTLPFMQPSYANSSPLPQMTTSSIPSFLEDNSTSTIMPLEEEVLLQALNDAAETVNSSLIPPVTQQPCPTEPLNENAIHVPHSISNPGYMNNRSYQAQYATSETLDTTYPDPMLIEMERIKKLKEEVSKIHEKKTLQLQSDYQKEVEKLRERYTMLIQNADTAVALKIEELEMQCKIACMNKALAEAWVDAEYIDQVPTPSSSSSHVPKHHTSRMRAQGFRQCIAGPPIMHPTLSTPMMGVHPSGTIPQISPVRTCFNPMTQSFRNLHDDGNSFLAQARASVAASSDPVPLMPNENSGLPDQLLYQ | 1700 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal20g0097 | 1700 | Coils | Coil | 1533 | 1553 | - | - | |
| Lal20g0097 | 1700 | MobiDBLite | consensus disorder prediction | 870 | 919 | - | - | |
| Lal20g0097 | 1700 | SUPERFAMILY | Chromo domain-like | 186 | 234 | IPR016197 | - | |
| Lal20g0097 | 1700 | SMART | chromo_7 | 101 | 160 | IPR000953 | - | |
| Lal20g0097 | 1700 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 104 | 158 | IPR023780 | - | |
| Lal20g0097 | 1700 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 102 | 167 | IPR000953 | - | |
| Lal20g0097 | 1700 | SMART | PHD_3 | 44 | 89 | IPR001965 | - | |
| Lal20g0097 | 1700 | Gene3D | - | 277 | 486 | IPR038718 | - | |
| Lal20g0097 | 1700 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 572 | 738 | IPR001650 | - | |
| Lal20g0097 | 1700 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 97 | IPR013083 | - | |
| Lal20g0097 | 1700 | SUPERFAMILY | FYVE/PHD zinc finger | 25 | 92 | IPR011011 | - | |
| Lal20g0097 | 1700 | SUPERFAMILY | Chromo domain-like | 61 | 163 | IPR016197 | - | |
| Lal20g0097 | 1700 | Gene3D | - | 1503 | 1583 | - | - | |
| Lal20g0097 | 1700 | MobiDBLite | consensus disorder prediction | 952 | 973 | - | - | |
| Lal20g0097 | 1700 | MobiDBLite | consensus disorder prediction | 1678 | 1700 | - | - | |
| Lal20g0097 | 1700 | MobiDBLite | consensus disorder prediction | 1211 | 1232 | - | - | |
| Lal20g0097 | 1700 | Pfam | SNF2-related domain | 303 | 453 | IPR000330 | GO:0005524|GO:0140658 | |
| Lal20g0097 | 1700 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 486 | 749 | IPR027417 | - | |
| Lal20g0097 | 1700 | PANTHER | HELICASE PROTEIN MOM1-LIKE ISOFORM X1 | 46 | 1691 | - | - | |
| Lal20g0097 | 1700 | ProSitePatterns | Zinc finger PHD-type signature. | 45 | 88 | IPR019786 | - | |
| Lal20g0097 | 1700 | Gene3D | - | 487 | 720 | IPR027417 | - | |
| Lal20g0097 | 1700 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 46 | 1691 | - | - | |
| Lal20g0097 | 1700 | MobiDBLite | consensus disorder prediction | 885 | 919 | - | - | |
| Lal20g0097 | 1700 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 311 | 453 | IPR027417 | - | |
| Lal20g0097 | 1700 | ProSiteProfiles | Zinc finger PHD-type profile. | 42 | 91 | IPR019787 | - | |
| Lal20g0097 | 1700 | Gene3D | - | 181 | 235 | - | - | |
| Lal20g0097 | 1700 | Gene3D | - | 103 | 161 | - | - | |
| Lal20g0097 | 1700 | CDD | SF2_C_SNF | 567 | 699 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal20g0097 | Lal-Chr20 | 624259 | 638492 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Lal20g0097 | SNF2_N | 1.3e-08 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal20g0097 | - | K11643 | gmx:100813574 | 1393.64 |