Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0096 ATGGAAGCTATGACCAAGAGCAATGGACACCACCACCAAAACCAAAATGAGTCATTGTGCTTGAATACTAGCACTACCACTAATGGATCAATCAGTCAAGAAGACCCTCTCAATTGGGGTGTGGCTGCTGAGTCACTCAAGGGCAGCCACCTCGACGAGGTTAAGCGTATGGTGGCTGAATATCGAAAGCCTGTGGTCATGCTTGGCGGCAAGACACTCACCATATCTCAGGTGGCTGCTATTGCCGCCAAGGACCAAGGCGTTCAAGTAGAGCTGTCAGAATGGGCTCGGGCTGGTGTGAAGGCGAGTAGTGATTGGGTGATGGAGAGTATGAACAATGGGACAGATAGTTATGGTGTCACCACTGGCTTTGGTTCCACTTCTCACCGTAGAACCAAAAAAGGTGGTGCTTTGCAGAATGAGCTCATCAGGTTTTTGAATGCTGGAATATTTGGGAATGGAACAGAAACAAGTCACACATTGCCACAGAGCGCAACAAGAGCAGCAATGCTAGTTAGAATCAACACACTTCTCCAAGGCTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATTGCAAAACTCCTTAACAACAACATCACACCTTGTTTACCACTTCGCGGTACTATCACTGCTTCGGGTGATCTTGTCCCTCTTTCCTACATTGCTGGTTTATTAACTGGAAGACCAAATTCCAAAGCCATTGGACCCCAAGGAGAGGTTCTTAATGCTAAACAAGCATTCAATGTTGCTGGCATCAATTCTGACTTCTTTGAATTACAACCAAAGGAAGGACTTGCACTTGTTAATGGCACTGCTGTTGGTTCTGGCTTAGCTTCTATTGTTCTATTTGAAGCAAATGTTCTAGCTGTGCTAGCTGAAGTTTTATCAGCTATTTTTGCTGAAGTGATGCAAGGAAAACCTGAATTCACTGACCATTTGACACATAAGTTGAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGTTCTTACATGAAAGCTGCTAAGAAGTTGCATGAGGTGGATCCTTTGCAGAAGCCGAAACAAGATCGTTATGCCCTTAGAACTTCACCACAGTGGCTTGGTCCTCTTATTGAGGTCATTAGATTTTCAACAAAGTCAATTGAGAGAGAGATTAACTCTGTTAATGACAACCCTTTAATTGATGTTTCAAGGAATAAGGCCTTGCATGGTGGTAATTTCCAAGGAACCCCTATTGGTGTGTCTATGGATAATACACGTTTGGCTCTTGCATCAATTGGAAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGCAGAAATCCCAGCTTGGATTATGGTTTCAAAGGAGCTGAAATTGCTATGGCTTCTTATTGTTCTGAACTACAGTATCTTGCAAATCCGGTAACAACTCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCTTTGGGTTTGATTTCTTCTAGAAAAACAAATGAAGCTGTTGAGATCCTGCAGCTTATGAGTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCGCGGTGAAGAACACTGTTAGCCAAGTTTCTAAGAGGACTCTTACCACAGGTGTGAATGGAGAACTCCATCCTTCAAGGTTTTGTGAGAAGGATTTGTTGAAGTTGGTTGAAAGGGAGCATGTATTTGCCTACATTGATGACCCTTGCAGTGCTACATACCCTTTGATGCAAAAACTGAGGCAAGTGCTTGTGGATCATGCATTAGCAAATGCAGAGAATGAGAAGAATTTAAGCACATCAATATTTCAAAAGATTGCAGCATTTGAGGATGAGTTGAAGGCTGTTTTGCCAAAGGAGGTTGAGAGTGCAAGGGCTGCATATGAGAGTGGCAATTCAGAAATTCCAAACAAGATCAATGAATGCAGATCTTATCCATTGTATAAGTTTGTGAGAGAGGAATTGGGGAGTGAGTTGTTGACTGGAGAAAAAGTCAGGTCACCAGGTGAAGAGTGTGACAAACTGTTCACAGCAATGTGTCATGGTCAAATTATTGATCCTCTTTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCTCTTCCAATTTCTTAG 2181 0.4269 MEAMTKSNGHHHQNQNESLCLNTSTTTNGSISQEDPLNWGVAAESLKGSHLDEVKRMVAEYRKPVVMLGGKTLTISQVAAIAAKDQGVQVELSEWARAGVKASSDWVMESMNNGTDSYGVTTGFGSTSHRRTKKGGALQNELIRFLNAGIFGNGTETSHTLPQSATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPQGEVLNAKQAFNVAGINSDFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAVEILQLMSSTFLIALCQAIDLRHLEENLKSAVKNTVSQVSKRTLTTGVNGELHPSRFCEKDLLKLVEREHVFAYIDDPCSATYPLMQKLRQVLVDHALANAENEKNLSTSIFQKIAAFEDELKAVLPKEVESARAAYESGNSEIPNKINECRSYPLYKFVREELGSELLTGEKVRSPGEECDKLFTAMCHGQIIDPLLECLGEWNGAPLPIS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0096 726 MobiDBLite consensus disorder prediction 1 35 - -
Lal20g0096 726 Gene3D - 26 272 IPR024083 -
Lal20g0096 726 CDD PAL-HAL 71 536 IPR001106 -
Lal20g0096 726 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 35 715 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lal20g0096 726 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 208 224 IPR022313 GO:0016841
Lal20g0096 726 SUPERFAMILY L-aspartase-like 34 725 IPR008948 GO:0003824
Lal20g0096 726 Pfam Aromatic amino acid lyase 73 551 IPR001106 -
Lal20g0096 726 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 25 725 - -
Lal20g0096 726 PANTHER HISTIDINE AMMONIA-LYASE 25 725 IPR001106 -
Lal20g0096 726 Gene3D Fumarase/aspartase (Central domain) 273 721 - -
Lal20g0096 726 Gene3D - 539 660 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0096 Lal-Chr20 620825 623808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0096 8 725 Monolignol Biosynthesis Gene Families AT2G37040 82.386 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0096 K10775 - gmx:100787902 1270.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0096 20 620825 623808 Lal13g0139 13 899843 904899 ECH
Lal20g0096 20 620825 623808 Lal24g0130 24 943984 948590 ECH
Lal20g0096 20 620825 623808 Lal20g0096 20 620825 623808 ECH