Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0093 ATGACAAAGGAAATCAAAGATGCACCACAAGGTGAATTGGATCACAAGGAGGACTACTATGTCCCACCACCAGCACCATTTTTTGATGCCAAAGAACTCTTCCAGTGGTCTTTTTATAGGGCCATTATTGCAGAGTTCGTTGCCACACTCCTCTTCTTGTATATAACCATTTTGACCGTTATCGGCCAACACAGCCAGACTGATGTGGCTCATGGCGGCGATGCTTGTGGCGGCGTTGGGATTCTTGGTATTGCTTGGGCATTTGGTGGCATGATCTTTGTTCTTGTGTACTGCACCGCTGGAATATCAGGGGGTCACATAAACCCAGCGGTTACATTCGGTTTGCTCCTTGCAAGAAAGGTGTCATTAGTGAGAGCTCTATTATACATGGTGGCTCAGGTTTTGGGGGCAATATCTGGTGCTGGGTTAGTGAAGGCTTTTCAAAAGGGTTACTACAACAGGTACAAAGGTGGTGCTAATATGCTAGCTCATGGTTACAGCAAAGGAACTGGTTTGGGTGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACAGTCTTCTCTGCCACTGACCCTAAGAGAAAAGCAAGAGATTCTCATGTTCCAGTTTTGGCACCACTTCCGATTGGATTTGCTGTGTTCTTGGTTCACCTGGCCACCATCCCTATCACCGGAACCGGCATCAACCCTGCTAGAAGCTTCGGAGCTGCTGTCTTGTACAACAACAAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTGGGACCCTTCATTGGTGCTGGCATTGCTGCAATCTACCACCAATACGTGTTGAGAGCACATTCAGGCAAGTCTCATGGTTCTTCAATGAGTTCCCAACATCTCTAA 867 0.4729 MTKEIKDAPQGELDHKEDYYVPPPAPFFDAKELFQWSFYRAIIAEFVATLLFLYITILTVIGQHSQTDVAHGGDACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRALLYMVAQVLGAISGAGLVKAFQKGYYNRYKGGANMLAHGYSKGTGLGAEIVGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSFGAAVLYNNKKAWDDQWIFWVGPFIGAGIAAIYHQYVLRAHSGKSHGSSMSSQHL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0093 288 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Lal20g0093 288 TIGRFAM MIP: MIP family channel proteins 44 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 Pfam Major intrinsic protein 34 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g0093 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Lal20g0093 288 PANTHER AQUAPORIN PIP2-4-RELATED 1 284 - -
Lal20g0093 288 SUPERFAMILY Aquaporin-like 31 274 IPR023271 -
Lal20g0093 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 284 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0093 Lal-Chr20 588654 591908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0093 1 288 Major Intrinsic Protein MIP AT2G37170 75.342 5.85e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0093 K09872 - cit:102608729 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0093 20 588654 591908 Lal12g0151 12 1052168 1055703 ECH
Lal20g0093 20 588654 591908 Lal13g0132 13 848015 852836 ECH
Lal20g0093 20 588654 591908 Lal2g1040 2 7139638 7145638 ECH
Lal20g0093 20 588654 591908 Lal20g0093 20 588654 591908 ECH
Lal20g0093 20 588654 591908 Lal2g0292 2 1697540 1706404 ECH
Lal20g0093 20 588654 591908 Lal9g0270 9 1675756 1677887 ECH
Lal20g0093 20 588654 591908 Lal1g0379 1 2294033 2296218 ECH
Lal1g1816 1 20519335 20521969 Lal20g0093 20 588654 591908 LSH