Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0091 ATGGGCAACATCTCTACCACCCACGGCGGGTCACACCGTCGCCGACTCTCTAACGCCACCAGACGGAGCAGCCACCCTCTCCCTCCTCCACCCCTAACACCTCACCCTGATATCACCGCCCATCAATTCCTCTACCCAGGCCCATCACAATCACCATACCCTAACCCCAACGCTCCGATTCAATACCCTCAGCCGCAGTACCAATACCCCGGTGGTTACTATCCTCCACCACCGCCGCCGCCGCCACATCACCATCCTCCGCACTATCCTTACCCGATTATGGCTCCTCATGCGCCTTATGTTGAGCATCAGAGAGCGGTTACGATAAGGAACGATGTCAATATTAAGAAGGAGACGCTTCAGATTGAGCCTGATGACGAAAATTCAGGGAGATTCCTTGTCAATTTTACGTTTGATGCTACCGTTTCTGGAAGCATCACCATATATTTCTTTGCAAAGGAAGGTGAAGGCTGTAACCTCACACCAATGAAGGAAAACCATATAGCACCAGTGACTGTGCATTTCGAGAAAGGACTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATTGATTTCTCAATGTTTGAGGAGTCAGAGTTATTGAAAGTGGCTGACTTGGATGTCTATCCTCTAGCAGTGAAGGCAGATGCATCATCCAGTAATCATGATGAATCAAATGAAGCTCCAACTCCTGGTAACAATAACACAAACTCTCAGATAACCCAAGCAGTGTTTGTGAAGGATAAAGGAGAATTTCGAGTCAAAGTTATTAAGCAGATTTTGTCAGTAAATGGAATTAGGTATGAGCTGCAGGAGATATATGGTATCGGGAATTCAATGGAGAGTGACATGGATGAGAATGATCAAGGAAAGGAGTGTGTCATCTGCTTGTCAGAGCCTCGGGACACCATTGTCCATCCTTGCCGACATATGTGCATGTGCAGCGGATGTGCAAAGGTTTTAAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAATTGAGAGGCTTTTGGAGATAAAGGTAGGATCTGAGGAGTGA 1047 0.4728 MGNISTTHGGSHRRRLSNATRRSSHPLPPPPLTPHPDITAHQFLYPGPSQSPYPNPNAPIQYPQPQYQYPGGYYPPPPPPPPHHHPPHYPYPIMAPHAPYVEHQRAVTIRNDVNIKKETLQIEPDDENSGRFLVNFTFDATVSGSITIYFFAKEGEGCNLTPMKENHIAPVTVHFEKGLGQKFRQPAGTGIDFSMFEESELLKVADLDVYPLAVKADASSSNHDESNEAPTPGNNNTNSQITQAVFVKDKGEFRVKVIKQILSVNGIRYELQEIYGIGNSMESDMDENDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPIERLLEIKVGSEE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0091 348 MobiDBLite consensus disorder prediction 1 88 - -
Lal20g0091 348 MobiDBLite consensus disorder prediction 49 88 - -
Lal20g0091 348 Pfam Zinc finger, C3HC4 type (RING finger) 292 338 - -
Lal20g0091 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 343 IPR013083 -
Lal20g0091 348 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 293 333 IPR045195 -
Lal20g0091 348 SUPERFAMILY RING/U-box 293 338 - -
Lal20g0091 348 ProSiteProfiles Zinc finger RING-type profile. 294 333 IPR001841 -
Lal20g0091 348 MobiDBLite consensus disorder prediction 218 239 - -
Lal20g0091 348 PANTHER MAHOGUNIN 1 347 IPR045194 GO:0061630
Lal20g0091 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 347 - -
Lal20g0091 348 MobiDBLite consensus disorder prediction 219 239 - -
Lal20g0091 348 SMART ring_2 294 332 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0091 Lal-Chr20 574536 577780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0091 88 313 C3H Transcription Factor Family AT3G09770 62.232 5.99e-95 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0091 - - aprc:113862864 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0091 20 574536 577780 Lal20g0091 20 574536 577780 ECH