Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0082 ATGGTGAGGAAGGGAAATTGGTTTTCTAGTGTGAAGAAAGCTCTCAGCCCTGACTCAAATGAGAAGAAAGATCAGACTTTAGGCTCATACTCAGGAACTGATAATGCATCATTGCTTCCTCCACCTGAGATTAAATTAACTAATCATGAAAATGAAAACATTGGTGATAATGCAACAACCATTGTTGCTGAGGAACCTATTACAGTTCCTGCTGTTCAAACAGTTGCTAGGGTTGAAGGTGCTAAAATTGCTCGGTTTGCTGGTAAACCAAAGGATGAGGTGGCTGCAATCAAGATTCAAACAGCTTTCCGGAGATGCTTGGCAAGAAGAGCATTGCAGGCTTTAAGAGGGCTGGCGAGGTTGAAATCATTGATGGAAGGGGCCATTGTAAAACGCCAAGCCGCAAGTACCCTCCGCTCTATGCAGACGTTAGCACGAGTGCAATCTCAGATTCATTCTAGGAGGATCAGAATGTTAGAGGAGAATCAAGCTCTGCAGAGACAGATTTTACAGAAGCATGCAAAAGAGCTTGACAGTATGCGGATTGGAGAAGAATGGGATGACAGCCTACAATCAAAAGAACAAATTGAAGCCAAGTTACTAAGCAAATATGAGGCTGCTATGAGAAGAGAAAGAGCCCTGGCTTATTCTTTCACTCGTCAGCAAAATGGGAAGACTACGTGTAGATCTATAAATCCAATGTTCATGGATTCAACCAATCCTAGCTGGGGTTGGAGCTGGTTGGAACGATGGACAGCAGCCCAGACTTGGGAGGCCCGTAACCTGATTGATAAAGACCTGAATGACCGCTCATCTGTAAGAAGCTCAATCCGCAGCATTACTGGTGTTGAGATCAGCAAATCATTTGCGCGTTTCCAGCTCAATTCTGAAAAGCATTCTCCAACAGCCAGCCAAAATCCTGTCTCACCTAACTTTCAGTCCCATCCAACTCCTTCCAAGCCACCGTCTCCGTCTGTTGCTATGAAACTAAAGAAGGCGAGCCCAAAAGGTAGTCTGGTTATGGATGACGACTCCAAAAGCATGGTCAGTGTACAGTTCCGGAGGCACACCATTGCTAGTTCATCAGTGAGAGATGATGAGAGCCTTGCTAGCTCTCCATCCGTTCCAAGTTACATGGTGCCAACTCAATCTGTAAAAGCTAAGTCCAGGACACAAAGTCCATTAGCCACCGCAAATTGTCAAGCAGAGAAAGGGTCCTTTAGGACTGCAAAGAAACGTCTTTCTTACCCAGCTTCACCTGCCAGACCAAGGAGGCATTCAGGTCCAGCAAAGGTAGAAAGAAGCTTAAATGAAGAATTCACTGTGGCCAAATGA 1335 0.4517 MVRKGNWFSSVKKALSPDSNEKKDQTLGSYSGTDNASLLPPPEIKLTNHENENIGDNATTIVAEEPITVPAVQTVARVEGAKIARFAGKPKDEVAAIKIQTAFRRCLARRALQALRGLARLKSLMEGAIVKRQAASTLRSMQTLARVQSQIHSRRIRMLEENQALQRQILQKHAKELDSMRIGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYSFTRQQNGKTTCRSINPMFMDSTNPSWGWSWLERWTAAQTWEARNLIDKDLNDRSSVRSSIRSITGVEISKSFARFQLNSEKHSPTASQNPVSPNFQSHPTPSKPPSPSVAMKLKKASPKGSLVMDDDSKSMVSVQFRRHTIASSSVRDDESLASSPSVPSYMVPTQSVKAKSRTQSPLATANCQAEKGSFRTAKKRLSYPASPARPRRHSGPAKVERSLNEEFTVAK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0082 444 MobiDBLite consensus disorder prediction 360 444 - -
Lal20g0082 444 ProSiteProfiles IQ motif profile. 92 120 IPR000048 GO:0005515
Lal20g0082 444 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 6 441 - -
Lal20g0082 444 MobiDBLite consensus disorder prediction 1 42 - -
Lal20g0082 444 MobiDBLite consensus disorder prediction 360 404 - -
Lal20g0082 444 Pfam IQ calmodulin-binding motif 95 112 IPR000048 GO:0005515
Lal20g0082 444 MobiDBLite consensus disorder prediction 21 36 - -
Lal20g0082 444 PANTHER IQ-DOMAIN 5-RELATED 6 441 - -
Lal20g0082 444 MobiDBLite consensus disorder prediction 296 345 - -
Lal20g0082 444 MobiDBLite consensus disorder prediction 296 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0082 Lal-Chr20 536142 540096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0082 1 433 IQD Protein Family AT5G03040 49.567 1.87e-127 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0082 - - gmx:100800080 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0082 20 536142 540096 Lal20g0082 20 536142 540096 ECH
Lal11g1146 11 15173882 15177489 Lal20g0082 20 536142 540096 LSH
Lal1g1828 1 20607535 20611714 Lal20g0082 20 536142 540096 LSH
Lal20g0082 20 536142 540096 Lal12g0933 12 7857020 7861919 PCT
Lal20g0082 20 536142 540096 Lal24g0862 24 7006378 7012489 PCT
Lal12g0933 12 7857020 7861919 Lal20g0082 20 536142 540096 PCT
Lal24g0862 24 7006378 7012489 Lal20g0082 20 536142 540096 PCT