Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0079 ATGTTGGATCTCAACCTCAACAACACTCTTCATTTTGAATCCTCTCTTAGCTTCAATTCTTCTTCTTCCATTCTCAACCCTACCGATACCGATGATTCTTCTTCTTTCGACAACACTACCACTTTTCCTTACAACTTCCCCATTCTTAACTCCACCAATCATTCTCATATTTCAACTATTCAGCTTTTTCCGCCTGCCGGAGATGTTCAACAGTTACCGGAATCACCGTCTTCAGTAACTGCGTCGCACAGGATAATTACTTCTCAGCCGCAGCAGAAACAGGTTGTCAAGAAAAGTCGTCGTGGACCGAGGTCTCGGAGTTCACAGTATCGTGGCGTTACGTTTTATCGAAGAACGGGACGATGGGAATCGCATATCTGGGATTGTGGAAAACAAGTTTACTTAGGTGGATTTGATACAGCGCATGCTGCGGCAAGGGCATATGATCGAGCTGCAATCAAGTTTCGTGGGGTTGATGCAGATATCAATTTTAATGTCAGTGATTATGATGAAGATATAAAACAGATGGGTAACTTCACAAAAGAAGAGTTTGTGCATATTCTGCGGAGACAGAGCACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAATGTGGCAGGTGGGAAGCACGCATGGGACAGTTTCTTGGGAAAAAGTATATATATCTTGGCCTATTTGATAGCGAATTAGAGGCTGCAAGAGCATATGATATGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTAACAAACTTTGAGGCCAGCTCATATGACGGGGAGGTAATTTCACAGGCTGATAATGAAGATAGTGAGCTAATTCTTGATCTTAACTTGGGCATAGCTCCTCCTTCATGTGATGGCCAAATCAAGAACATGCATAACAATGAGAATGGTTTACAAGTTCAGCGTAGCTGGGATGACATCCCTATTGATAGTAGACTTATGTTTGAGCACTCTGGACCAAGATCAATGATGGCTCAGCCATCTCATGGCTTCTCCATAACATCTGAGCATCCTCCAGTTTGGAATGGCACCAATTTCCTTCCCATCTGCAAGGAAAGAGCAATAGAGAATAGGATGGAAACAGATCCCTTAGCAAATAGGGCATGGCAACTCCAAGGTCCTTATGGAGGGGCACCTCTTATTCCACCATTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGAAAGTCAACTTCATCATTTTCCAAACATGATGTTTTTCAACCCTCATTTCCCTCCATCAATCCCCAACTCCAGCACCATGCCCAATTTCTACTGCAGGAGCTGA 1326 0.4374 MLDLNLNNTLHFESSLSFNSSSSILNPTDTDDSSSFDNTTTFPYNFPILNSTNHSHISTIQLFPPAGDVQQLPESPSSVTASHRIITSQPQQKQVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMGNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDMAAIKCNGREAVTNFEASSYDGEVISQADNEDSELILDLNLGIAPPSCDGQIKNMHNNENGLQVQRSWDDIPIDSRLMFEHSGPRSMMAQPSHGFSITSEHPPVWNGTNFLPICKERAIENRMETDPLANRAWQLQGPYGGAPLIPPFSAAASSGFPSTIIPSAAESQLHHFPNMMFFNPHFPPSIPNSSTMPNFYCRS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0079 441 SUPERFAMILY DNA-binding domain 108 167 IPR016177 GO:0003677
Lal20g0079 441 PRINTS Ethylene responsive element binding protein signature 202 213 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 PRINTS Ethylene responsive element binding protein signature 240 260 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 MobiDBLite consensus disorder prediction 71 96 - -
Lal20g0079 441 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 12 432 - -
Lal20g0079 441 ProSiteProfiles AP2/ERF domain profile. 201 258 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 SUPERFAMILY DNA-binding domain 200 259 IPR016177 GO:0003677
Lal20g0079 441 CDD AP2 200 260 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 Pfam AP2 domain 200 250 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 Pfam AP2 domain 109 157 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 CDD AP2 109 167 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 ProSiteProfiles AP2/ERF domain profile. 109 165 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 432 - -
Lal20g0079 441 Gene3D AP2/ERF domain 200 259 IPR036955 GO:0003700|GO:0006355
Lal20g0079 441 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Lal20g0079 441 SMART rav1_2 109 171 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 SMART rav1_2 201 264 IPR001471 GO:0003700|GO:0006355
Lal20g0079 441 MobiDBLite consensus disorder prediction 67 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0079 Lal-Chr20 520894 524065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0079 77 284 AP2-EREBP Transcription Factor Family AT4G36920 74.882 5.17e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal20g0079 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0079 K09284 - gmx:100808212 558.525