Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0078 CTTCAAGCTCCAGCAATGGCGGCAGCAGCAGCAGCAGCTCGTCCACTTGTCACCGTTCAAGTCGTCACCGGCGACATCGCCACAGACTCCGCACCCACCGTCGCCCTCCCCGACGTTATGAAGGCCTCGATCCGCCCCGACATCGTCAACTTCGTCCACTCCAACATCTCCCGCAACAGCCGCCAACCCTACGCCGTGAGCCGCAAAGCCGGTCATCAGACCTCCGCCGAGTCATGGGGTACCGGCCGTGCCGTCTCCCGTATCCCTCGTGTTTCCGGAGGTGGTACACACCGTGCGGGTCAGGCAGCCTTTGGAAACATGTGCCGCGGCGGTCGCATGTTCGCACCAACCAGGATCTGGCGCCGATGGCACCGCAAAGTCAACATCAACCAAAAGCGCTACGCCATCGTCTCCGCCATCGCCGCCTCCGCAATCCCCTCTCTGGTCCAAGCCCGTGGACACAAGATCGAGACCGTCCCTGAGCTTCCCTTAGTTGTCAGCGACACCGTTGAAGGCGTAGAGAAGAGCAAGGAAGCAATCAAGGTCTTGAAAGAAATCGGCGCTTTCAGCGACGCCGAGAAAGCGAAGGATAGCCGCGGCATTCGTCCCGGTAAGGGAAAATTGCGTAACCGTCGCTACATTTCTCGCAAAGGACCTCTAATTGTGTATGGAACCGAAGGTGCGAAAGCGGTTAAGGCTTTCAGGAACATTCCAGGCGTTGAGATCGCCAATGTTGAGAGGCTGAACCTTCTGAAACTGGCACCTGGCGGTCATTTAGGTCGTTTCGTGGTTTGGACTAAATCGGCTTTTGAGAAATTGGATTCGATCTATGGAACATTCGAGAAGGCTTCGGAGAAGAAGAAGGGTTACGTGTTGCCAAGGTCGAAGATTGTGAATGCTGACCTGTCAAGGATAATTAACTCTGATGAGGTTCAATCAGTGGTGAAACCTATTAAGAAAGAGGTTAAGAGGAGTGGTATTAAGAAGAATCCGCTTAAGAATTTGAATGTTTTGTTGAAGTTGAATCCGTATGCGAAAACCGCGAAGAGGATGGCTCTTTTGGCTGAGAAGCAGCGTGTTATTGCAAAACAGGAGAAGCTCCAAAAGAAGCGCACCAACGTCTCTAAGGAGGAGGCTTCTGCTATCAAGGCTGCAGGAAAAGCTTGGTATCAAACTATGGTTTCTGACTCTGATTATGCTGAATTTGACAACTTCTCCAAGTGGCTCGGTGTTTCACAGTGA 1242 0.5282 LQAPAMAAAAAAARPLVTVQVVTGDIATDSAPTVALPDVMKASIRPDIVNFVHSNISRNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKVNINQKRYAIVSAIAASAIPSLVQARGHKIETVPELPLVVSDTVEGVEKSKEAIKVLKEIGAFSDAEKAKDSRGIRPGKGKLRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGTFEKASEKKKGYVLPRSKIVNADLSRIINSDEVQSVVKPIKKEVKRSGIKKNPLKNLNVLLKLNPYAKTAKRMALLAEKQRVIAKQEKLQKKRTNVSKEEASAIKAAGKAWYQTMVSDSDYAEFDNFSKWLGVSQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0078 413 Gene3D - 11 316 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lal20g0078 413 SUPERFAMILY Ribosomal protein L4 25 275 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lal20g0078 413 Pfam 60S ribosomal protein L4 C-terminal domain 288 359 IPR025755 -
Lal20g0078 413 ProSitePatterns Ribosomal protein L1e signature. 128 154 IPR013000 -
Lal20g0078 413 PANTHER BNAC03G35890D PROTEIN 7 413 - -
Lal20g0078 413 Pfam Ribosomal protein L4/L1 family 35 274 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lal20g0078 413 PANTHER 60S RIBOSOMAL PROTEIN L4 7 413 IPR045240 -
Lal20g0078 413 MobiDBLite consensus disorder prediction 62 98 - -
Lal20g0078 413 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0078 Lal-Chr20 516018 518033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0078 9 413 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.494 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0078 K02930 - gmx:100779764 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1833 1 20646755 20649006 Lal20g0078 20 516018 518033 LSH
Lal20g0078 20 516018 518033 Lal13g1144 13 8760925 8768348 PCT
Lal20g0078 20 516018 518033 Lal24g0853 24 6904232 6906805 PCT
Lal13g1144 13 8760925 8768348 Lal20g0078 20 516018 518033 PCT
Lal24g0853 24 6904232 6906805 Lal20g0078 20 516018 518033 PCT