Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0075 ATGGGTTGGATTCCATGTTCTGGAGCTTCAGGCACTAAGAAGAAGAAGAAGAAGCTGATGATAAAGGAGAATATTGATAAGATTGATCAGATCAAACCTTCCCAAGGGAAGTTGAAGAGGAACTTATCCACAAGTTCGAAGGATACATCTAAAAATGGGAACCCTGATCACATTGCTGCGCAGACTTTCTCATTCCGTGAGTTGGCAACTGCTACTAGAAATTTTAGAGCAGAATGTCTTCTAGGTGAGGGAGGTTTTGGTAGAGTATACAAAGGGCGTTTGGAAAGTATTAATCAGGTTGTCGCAATTAAGCAACTTGATCGAAATGGACTGCAAGGGAATAGAGAATTCCTTGTTGAAGTTTTGATGTTAAGTCTACTTCACCACCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTGCATGATATCCCTCCTGGCAAGAAACAACTTGACTGGAACACCCGAATGAAAATAGCTGCCGGGGCAGCAAAGGGATTGGAATACCTACATGACAGAGCTAATCCACCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGTCCAGTTGGGGAGAACACACATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCAATGACTGGTCAACTGACTCTGAAGTCAGATGTTTATAGCTTTGGGGTAGTTCTTCTGGAAATAATTACTGGAAGAAAAGCGATTGACAATTCAAAATCTGCAGCAGAGCAGAATCTTGTTGCATGGGCTAGACCTTTGTTTAAAGATAGAAGAAAATTCTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCAAATATGCGGCCAGTTATAGCTGATGTTGTCACTGCTTTGTCTTACCTTGCTTCACAAAGATATGATCACATTACACAGACAGCTCAAAACTCTCACTTTTCTCCTAATACTCCTCCTAGAAACAGGAGAGGACAATGA 1146 0.418 MGWIPCSGASGTKKKKKKLMIKENIDKIDQIKPSQGKLKRNLSTSSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPPGKKQLDWNTRMKIAAGAAKGLEYLHDRANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAAEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDHITQTAQNSHFSPNTPPRNRRGQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0075 381 MobiDBLite consensus disorder prediction 362 381 - -
Lal20g0075 381 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Lal20g0075 381 CDD STKc_IRAK 81 349 - -
Lal20g0075 381 Gene3D Transferase(Phosphotransferase) domain 1 152 373 - -
Lal20g0075 381 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Lal20g0075 381 SUPERFAMILY Protein kinase-like (PK-like) 61 364 IPR011009 -
Lal20g0075 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lal20g0075 381 Pfam Protein tyrosine and serine/threonine kinase 79 347 IPR001245 GO:0004672|GO:0006468
Lal20g0075 381 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0075 381 PANTHER OS07G0668900 PROTEIN 1 379 - -
Lal20g0075 381 MobiDBLite consensus disorder prediction 36 56 - -
Lal20g0075 381 MobiDBLite consensus disorder prediction 35 56 - -
Lal20g0075 381 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 379 - -
Lal20g0075 381 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0075 Lal-Chr20 499686 503620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0075 56 354 Glycoside Hydrolase AT3G07070 71.572 1.48e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal20g0075 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0075 - - gmx:100793549 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0075 20 499686 503620 Lal12g0917 12 7633498 7637188 PCT
Lal20g0075 20 499686 503620 Lal13g1140 13 8722915 8726007 PCT
Lal12g0917 12 7633498 7637188 Lal20g0075 20 499686 503620 PCT
Lal13g1140 13 8722915 8726007 Lal20g0075 20 499686 503620 PCT