Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0071 ATGTGTGTAAAACCCCATACTCAACTCTCACCCATGGCTGACAACACAGTCTCTTTCTTTAACAAATCCATGGAACTTGTCCAACCTCATACCAGAACCCGTTCCAATCTCTCTTCAACACTTGGTGAACTCCTTAAACGCGTTGAAGATGCTCAAAACGACACCGATACTCTCCCATCTCACCATGTTCTAAACCTACCACCTTCTCACTCTTTCATCTTATCATTCACCAACTTAACCTATTCTGTCAAACTCCGCCGTAAAATCACCTTCTCCTCATACACTCCTTCCCTTCAAAACGATGTCGTTCAACCCAAACCCAACTGCACCACTAAAACTCTCCTCAACGCTATCTCCGGCGAGGCCAAAGACGGCGAGATCATGGCTGTTCTCGGCGCCAGCGGCTCTGGGAAATCCACTCTTATTGACGCACTTGCTGATCGTATCTCCAAGGAGAGCCTCAAAGGAACGGTTACGTTAAACGGTGACGTTGTTGATTCAAGTTTGTTAAAGGTTATATCAGCTTATGTTATGCAAGATGATCTTCTTTTCCCAATGTTAACTGTTGAAGAAACTCTTATGTTCTCTGCGGAGTTTCGCCTCCCTCGTTCTTTATCCAAATCAAAGAAGAAGGCACGAGTCCAAGCCCTAATCGATCAACTCGGTCTCCGCAATGCTGCCACCACCGTTATCGGAGATGAAGGACATCGCGGCGTATCCGGCGGAGAACGCCGACGTGTATCAATCGGGATAGACATAATTCACGATCCGATAATCCTCTTCCTGGATGAACCTACCTCCGGATTAGACTCCACCAGCGCGTTCATGGTAGTGAAGGTGCTTCAGCGAATCGCTCAGAGTGGAAGCATTGTGGTCATGTCAATTCATCAACCTAGTTACAGAATTTTAGGTCTATTAGACCGTTTGATTTTCCTCTCTCACGGCGAAACCGTTTTCAGCGGCTCTCCGGCGATGATCCCTCCGTTTTTCTCCGAATTCGGTCACCCGATCCCGGAGAACGAAAACCGCACCGAGTTCGCATTAGACCTAATCCGAGAACTGGAAGAATCACCAGACGGTACAACAAGGTTAGTAGAGTTCAACAAATCATGGCAATTGAAAAACAAAACAGCTTCATCAAAGTCATCAATTCCAAATCTATCCCTGAAAGACGCCATCAGTGCAAGCATATCAAGGGGTAAATTAGTCTCAGGAGCACCAACGACAAGAAAAACCTTAACCTCAAATGAAACGACACCAGTTGAAGCGTTCGCTAATCCAATTTGGATAGAAATAGTAGTGATAGCAAAAAGATCGGTAACAAACTCACTACGAATGCCAGAATTATTCGGAATACGAATGGGTGCAGTTCTCGTGACAGGAGCAATATTAGCGACGATATTTTGGAGGCTTGATAATTCCCCAAAAGGTGTACAAGAAAGGTTAGGGTTATTTGCGTTTGCGATGTCAACAACATTTTACACATGTGCTGAAGCAATACCTGTATTTCTGCAAGAACGTTATATTTTCATGAGAGAAACTGCTTACAATGCTTATCGTCGCTCTTCTTACGTTCTCGCTCACTCTATTATCTCTTTGCCTGCTTTGGCATTCCTTTCTTTTGCCTTTGCTGCTACTACCTTTTGGGCCGTGGGCCTTTCTGGTGGGCCTTCTGGTTTTTTCTTTTACTTCCTCACCATCCTTGCTTCTTTCTGGGCCGGAAGCTCATTTGTCACCTTTCTTTCAGGTGTTGTGTCTCACGTGATGCTGGGTTTTACTGTGGTGGTTGCAATTTTAGCATATTTTCTTCTCTTCAGTGGGTTCTTCATCAGTAGGGACAGGATCCCTCCATATTGGATATGGTTCCATTATTTGTCCCTAGTGAAGTACCCTTATGAAGCTGTTTTACAAAACGAGTTTGATATTAAACCACCAACATGCTTCGTGAGGGGGATTCAGATATTCGATGGCACTCCATTGGGTTTGGTACCTTTGGAGCTGAAGATGGAACTGTTGAAGAGTTTGAGTAAGGTGTTGGGTATTAATATCACAAGCTCTACATGCGTGACCACAGGAGTAGATATATTGCACCAACAAGGGATCACTCAACTTAACAAATGGAATTGCTTGTGGGTCACGGTTGCTTGGGGCTTCTTCTTTAGATTTCTCTTTTATTTGGCATTGCTCCTAGGGAGCAAGAACAAGAGAAGGTAA 2214 0.4449 MCVKPHTQLSPMADNTVSFFNKSMELVQPHTRTRSNLSSTLGELLKRVEDAQNDTDTLPSHHVLNLPPSHSFILSFTNLTYSVKLRRKITFSSYTPSLQNDVVQPKPNCTTKTLLNAISGEAKDGEIMAVLGASGSGKSTLIDALADRISKESLKGTVTLNGDVVDSSLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKSKKKARVQALIDQLGLRNAATTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVVMSIHQPSYRILGLLDRLIFLSHGETVFSGSPAMIPPFFSEFGHPIPENENRTEFALDLIRELEESPDGTTRLVEFNKSWQLKNKTASSKSSIPNLSLKDAISASISRGKLVSGAPTTRKTLTSNETTPVEAFANPIWIEIVVIAKRSVTNSLRMPELFGIRMGAVLVTGAILATIFWRLDNSPKGVQERLGLFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISLPALAFLSFAFAATTFWAVGLSGGPSGFFFYFLTILASFWAGSSFVTFLSGVVSHVMLGFTVVVAILAYFLLFSGFFISRDRIPPYWIWFHYLSLVKYPYEAVLQNEFDIKPPTCFVRGIQIFDGTPLGLVPLELKMELLKSLSKVLGINITSSTCVTTGVDILHQQGITQLNKWNCLWVTVAWGFFFRFLFYLALLLGSKNKRR 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0071 737 CDD ABCG_EPDR 74 321 - -
Lal20g0071 737 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 98 339 IPR003439 GO:0005524
Lal20g0071 737 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 38 730 - -
Lal20g0071 737 Pfam ABC-2 type transporter 296 383 IPR043926 GO:0140359
Lal20g0071 737 Pfam ABC transporter 115 267 IPR003439 GO:0005524
Lal20g0071 737 Gene3D - 105 327 IPR027417 -
Lal20g0071 737 SMART AAA_5 124 339 IPR003593 -
Lal20g0071 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 326 IPR027417 -
Lal20g0071 737 Coils Coil 34 54 - -
Lal20g0071 737 Pfam ABC-2 type transporter 432 640 IPR013525 GO:0016020|GO:0140359
Lal20g0071 737 ProSitePatterns ABC transporters family signature. 239 253 IPR017871 GO:0005524
Lal20g0071 737 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 38 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0071 Lal-Chr20 473491 477723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0071 118 299 Calmodulin-binding Proteins AT2G36910 29.730 1.45e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0071 K05681 - gmx:100803426 1087.02