Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0070 ATGGGGGAGGGAGGGGAAAACTACGGAAGAATGGAAAACGTGAATTCTGAGAATTCGGATCGTGAAATCTTCAAAGCTTGGTCGAAAGATGTTGCGGAATGCGAAAAACACTTCAACGTGAGTGTCCAAACTGGATTGAGCAGTGAAGAAGTTGATAATCGGCGACGGATCTATGGATTCAATGAATTGGAGAAGCATGATGGTCAATCGATTTGGAAATTGGTTCTGGAACAGTTCAACGACACGCTTGTTCGGATTCTACTCGCCGCTGCGATAATCTCATTCGTGCTCGCGTGGTACGACGGAGATGAAGGCGGTGAGATGGAAATAACCGCTTTCGTGGAGCCGTTGGTGATTTTCTTGATTTTAATTGTCAACGCTATTGTTGGCGTGTGGCAAGAGAGTAATGCCGAGAAGGCGCTTGAAGCTTTGAAGGAGATTCAATCGGAGCACGCCACTGTTATTCGAGATAACGACAAAATTTCGGATTTACCAGCAAAAGAATTAGTTCCTGGTGATATTGTTGAGCTTAAGGTTGGTGATAAGGTTCCTGCAGATATGCGCGTTGTGAGGTTGATTAGTTCCACTTTGCGGTTAGAGCAGGGATCATTAACCGGAGAGAGTGAAGCTGTGAATAAAACTAACAAGCCTGTTCCTGAAGATACTGATATTCAAGGGAAGAGTTGTATTGTTTTCGCGGGGACTACGGTTGTTAATGGGAACTGCATTTGCTTGGTTACTCAGATTGGGATGGATACTGAGATTGGGAAGGTACATAACCAAATACACGAGGCTTCACAGAGCGAGGAGGATACACCATTGAAGAAGAAGCTCAACGAATTCGGAGAGACACTGACTATGATAATTGGATTGATATGCATATTGGTTTGGCTAATTAATGTTAAATACTTCCTGACCTGGGAAATTGTTGATGGCTGGCCGAGGAACTTTAAGTTCTCGTTCGAGAAGTGTACTTATTACTTTGAGATTGCAGTGGCTTTGGCTGTGGCTGCTATTCCGGAAGGTTTGCCTGCAGTGATCACAACTTGCTTGGCGCTTGGAACGCGCAAAATGGCACAGAAGAATGCGCTTGTTCGGAAGCTGCCGAGTGTGGAAACACTGGGTTGTACCACTGTGATTTGTTCGGATAAAACTGGTACATTGACTACAAACCAGATGTCAGTGACGAAATTGGTAGCTATTGGAACTAATGTAGATACGCTGCGAGCCTTCAAGGTGGAAGGAACTACCTACAATCCTGCCGATGGTAGAATAGAGAACTGGCCAGCAGGTAAATTGGATGCAAATCTTGAGATGGTAGCAAAAATTGCTGCGGTTTGTAATGATGCTGGAGTCACACAGTCGGAGCATAAGTTTGTTGCCCATGGAATGCCAACTGAAGCAGCATTGAAGGTTTTGGTGGAGAAGATGGGCCTTCCTGGAGGATCCAAAGATATACCATCAGCAAGTACACATAGTGTGCTACGCTGTAGTGAATGGTGGAATAAACATGACCCGCGGATTGCCACTCTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTTGACTCTAGTCTGGGAAAAAAGTTGCTTCTGGTTAAGGGTGCTGTAGAAAACTTGTTAGAAAGAAGCTCTAAAATTCAGTTGTGTGATGGTTCTGTTGTGAAACTGGACAATAACGCTAAGGACCTCATATTGCAAGCTCTTCGTGAAATGTCAACCAGTGCATTACGCTGTTTGGGATTTGCATACAAGGATGAGCTCCCTGACTTCGAAAACTACAGTGGTAATGATGACCATCCAGCTCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAAAGTGATCTCATTTTTGTTGGTTTGGTTGGGCTGAGAGATCCTCCTAGGGAGGAGGTACACCAAGCAATTGAAGACTGCAGAGCAGCTGGAATTCGTGTTATGGTTATTACTGGAGACAATAAGAACACTGCAGAAGCTATATGCCATGAAATAGGTGTATTTGGACCCAATGAAGACATTAGTTTGAAAAGTTTAACTGGCAGAGAGTTTATGGAACTTCGTGATAAAAAAGCCCATCTGAGACAGAGTGGTGGACTTTTGTTTTCGAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTCAAAGATGATGGAGAGGTGGTGGCCATGACTGGAGATGGTGTTAATGATGCACCTGCCTTAAAGCTTGCTGACATTGGTATTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCAGATGATAATTTTAGCTCAATAGTTTCAGCTGTTGGCGAGGGTAGATCTATCTACAATAACATGAAGGCTTTTATAAGGTACATGATCTCTTCCAATATTGGCGAGGTTGCTTCCATATTTCTAACAGCTGCACTCGGTATTCCTGAAGGGTTGATACCTGTCCAGCTTCTCTGGGTCAACCTTGTCACTGATGGACCCCCTGCAACAGCCTTAGGATTTAATCCACCAGATAAGGATATAATGAAGAAGCCTCCCCGGCGCAGTGATGACTCACTTATTAATTTGTGGACTCTATTCCGCTATCTGGCAAGTTTCCTTTTTTCTCTTCCTTTCTGTCACCTTTTACTGTACCATATGTTTCATATGTGGATGATATATGTAATTGGGATCTATGTTGGATTAGCTACAGTTGGCGTCTTCATCATTTGGTATACACATGGTTCGTTCTTGGGTATCGACCTTAGCGGGGATGGGCATACACTTGTCACTTACTCCCAACTTGCCAACTGGGGTCAATGCTCAACATGGGATAACTTCACTGCTTCTCCCTTCACCGCTGGTTCCAAAGTTATCTCATTCGATACACCCTGTGACTATTTCCAGGCTGGCAAAGTCAAAGCTATGACACTCTCCCTCTCGGTGCTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTTTCTGAGGATGGAAGCCTTCTTACAATGCCCCCATGGGTCAACCCTTGGCTTCTTCTGGCAATGTCTGTGTCATTTGGTCTGCACTTTTTGATCTTGTATGTGCCATTCTTAGCTCAAGTATTTGGTATCGTGCCCTTGAGCTTCAACGAGTGGCTTTTGGTTCTGGCTGTTGCACTTCCTGTGATTCTAATAGACGAAATTCTGAAATTTGTTGGGAGGTGTACAAGTACAAGTGGGTCTCAAGCAGCGGCTGCAAGATCAAAACAAAAATCAGAATAA 3261 0.4428 MGEGGENYGRMENVNSENSDREIFKAWSKDVAECEKHFNVSVQTGLSSEEVDNRRRIYGFNELEKHDGQSIWKLVLEQFNDTLVRILLAAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHATVIRDNDKISDLPAKELVPGDIVELKVGDKVPADMRVVRLISSTLRLEQGSLTGESEAVNKTNKPVPEDTDIQGKSCIVFAGTTVVNGNCICLVTQIGMDTEIGKVHNQIHEASQSEEDTPLKKKLNEFGETLTMIIGLICILVWLINVKYFLTWEIVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGTNVDTLRAFKVEGTTYNPADGRIENWPAGKLDANLEMVAKIAAVCNDAGVTQSEHKFVAHGMPTEAALKVLVEKMGLPGGSKDIPSASTHSVLRCSEWWNKHDPRIATLEFDRDRKSMGVIVDSSLGKKLLLVKGAVENLLERSSKIQLCDGSVVKLDNNAKDLILQALREMSTSALRCLGFAYKDELPDFENYSGNDDHPAHQLLLNPSNYSSIESDLIFVGLVGLRDPPREEVHQAIEDCRAAGIRVMVITGDNKNTAEAICHEIGVFGPNEDISLKSLTGREFMELRDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKDDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSSIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWTLFRYLASFLFSLPFCHLLLYHMFHMWMIYVIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHTLVTYSQLANWGQCSTWDNFTASPFTAGSKVISFDTPCDYFQAGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLAVALPVILIDEILKFVGRCTSTSGSQAAAARSKQKSE 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0070 1086 Gene3D - 44 265 - -
Lal20g0070 1086 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1068 IPR023298 -
Lal20g0070 1086 Pfam E1-E2 ATPase 147 361 - -
Lal20g0070 1086 Gene3D - 391 632 IPR023299 GO:0000166
Lal20g0070 1086 Pfam Cation transporting ATPase, C-terminus 816 1065 IPR006068 -
Lal20g0070 1086 SFLD p-type atpase 362 783 IPR044492 -
Lal20g0070 1086 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g0070 1086 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g0070 1086 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 320 403 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g0070 1086 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 890 1083 - -
Lal20g0070 1086 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 870 - -
Lal20g0070 1086 SUPERFAMILY HAD-like 622 835 IPR036412 -
Lal20g0070 1086 Gene3D - 77 1067 - -
Lal20g0070 1086 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Lal20g0070 1086 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Lal20g0070 1086 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Lal20g0070 1086 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Lal20g0070 1086 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Lal20g0070 1086 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Lal20g0070 1086 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Lal20g0070 1086 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Lal20g0070 1086 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Lal20g0070 1086 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Lal20g0070 1086 PANTHER CALCIUM-TRANSPORTING ATPASE 4 870 - -
Lal20g0070 1086 PANTHER CALCIUM-TRANSPORTING ATPASE 890 1083 - -
Lal20g0070 1086 SUPERFAMILY Calcium ATPase, transduction domain A 149 261 IPR008250 -
Lal20g0070 1086 Gene3D - 378 776 IPR023214 -
Lal20g0070 1086 SFLD C1.7: P-type atpase like 362 783 - -
Lal20g0070 1086 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0070 Lal-Chr20 465505 471429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0070 1 1086 Primary Pumps ATPases(2) AT1G07810 78.013 0.0 1724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0070 K01537 - gmx:100788807 1851.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1131 11 15058763 15064960 Lal20g0070 20 465505 471429 LSH
Lal1g1840 1 20670598 20676865 Lal20g0070 20 465505 471429 LSH