Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0065 ATGGAGATGCAGAGAATTATGGAGTTTCCAGATAGGATTATGGACAAGAGACCAAGGAAGAAGGCTCGTTTAACATGGGATATGCATCCACCACCACAACCACTTCATCCAATTCCTCCCCCTAAGGTTCTTCCCACAATATATCACAACCAGGAGGTTGGGAATGGAGTGGCTCCAAATCATGCCTATCCTTCCATGTTTTTTCGGGGAATGACTCGCAATGGATCACCCCCTTGGAGGCCTGATGATAAAGATGGTCACTATGTTTTTGCTGTCGGTGACAGTTTAACACCTCGATACAGAATTATCAGTAAAATGGGTGAAGGAACATTTGGTCAAGTCTTGGAATGTTTTGACAATGAAAAGAAAGAAGCTGTGGCAATTAAAGTTGTTCGGTCCATAAACAAGTATCGTGAGGCTGCAATGATTGAAATTGATGTCTTGATGAGGCTAGCCAGACATGACACCAATGGTGCACGTTGTGTGCAAATTCGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTACCGTTCCTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGACTTGTGCTTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTAGTCTCATCAGAATTTATTAAAGTGCCTGATTACAAGTTTCTATCACGGACCATGAAAGATGGCTCCTATTTCAAGAACCTACCCAAGTCTAGTGCCATTAAGCTTATTGATTTCGGGAGTACAACATTTCAACATCAGGATCACAGTTATGTGGTATCAACAAGACACTATCGTGCACCAGAAGTTATCTTAGGTATTGGGTGGAACTACCCTTGTGATCTTTGGAGTATAGGCTGCATACTAGTTGAGCTTTGCTCTGGCGAGGCACTTTTCCAGACACATGAGAACTTGGAACATCTTGCCATGATGGAAAGAGTTTTAGGGCCAATACCTCCCCATATGGTTGTCCGGGCCAATCGACGGTCTGATAAGTATTTTAGAAGGGGCACACGGTTAGGTTGGCCCGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCTCGTTTGCCGAACCTTATAATGCAGCACGTTGATCATTCTGCTGGTGATTTGATTGACCTCTTGCAAAGGCTCCTAAGGTATGACCCTGCAGAGCGGATAAAAGCAAGAGAAGCATTAAGACACCCCTTCTTCTCAAGAGATACTAAAAGACATGGTTACCCTTTATAA 1320 0.4273 MEMQRIMEFPDRIMDKRPRKKARLTWDMHPPPQPLHPIPPPKVLPTIYHNQEVGNGVAPNHAYPSMFFRGMTRNGSPPWRPDDKDGHYVFAVGDSLTPRYRIISKMGEGTFGQVLECFDNEKKEAVAIKVVRSINKYREAAMIEIDVLMRLARHDTNGARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFIKVPDYKFLSRTMKDGSYFKNLPKSSAIKLIDFGSTTFQHQDHSYVVSTRHYRAPEVILGIGWNYPCDLWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPIPPHMVVRANRRSDKYFRRGTRLGWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQRLLRYDPAERIKAREALRHPFFSRDTKRHGYPL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0065 439 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 433 - -
Lal20g0065 439 CDD PKc_CLK 87 428 - -
Lal20g0065 439 Gene3D Transferase(Phosphotransferase) domain 1 154 428 - -
Lal20g0065 439 SUPERFAMILY Protein kinase-like (PK-like) 87 432 IPR011009 -
Lal20g0065 439 Pfam Protein kinase domain 100 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0065 439 Gene3D Phosphorylase Kinase; domain 1 87 180 - -
Lal20g0065 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Lal20g0065 439 PANTHER BNAA07G37640D PROTEIN 2 433 - -
Lal20g0065 439 SMART serkin_6 100 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0065 439 ProSiteProfiles Protein kinase domain profile. 100 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0065 Lal-Chr20 436608 442276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0065 91 428 Core Cell Cycle Gene Families AT1G76540 25.926 1.61e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Lal20g0065 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0065 K08287 - gmx:100808061 796.964