Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0056 CCGCCATGGGCCCACGCTTCAGATCAAAATCCAACGGCTCACAGCCATACTAAAAATGTGAAAGAACATTCTGGAAAAACCTCCAAACCTCCAAACCTCCAAACCTCCAAACCCTACCTATATAATCCTACCTTCACGCTCAATAGCCGTGTATATCCTTTTTGTCTGCTTTCATTTTTCATTCATAGAAGCAACTCCAATCTTAATCTAATGGCCGGTAAAGGAGAGGGTCCTGCTATCGGTATCGATCTAGGAACAACGTATTCATGTGTTGGTGTGTGGCAACATGATCGCGTTGAGATCATTGCTAATGATCAAGGTAACAGAACCACGCCCTCTTACGTTGGATTTACCGATTCTGAACGTCTCATCGGTGATGCCGCTAAGAACCAAGTCGCTATGAATCCTATCAACACCGTCTTCGATGCGAAGAGGTTGATTGGACGAAGATACAGTGATGCCTCTGTTCAGAGTGACATTAAATTGTGGCCTTTTAAGGTCATTTCTGGTCCTGCTGAAAAGCCAATGATTCAAGTCAACTACAAGGGTGAGGACAAGCAATTTGCTGCTGAGGAAATCTCTTCTATGGTACTCATGAAGATGCGTGAGATTGCTGAGGCTTTTCTCGGCTCTGCTGTGAAGAACGCAGTTGTCACCGTCCCTGCTTACTTTAATGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTGTCATTGCTGGTCTTAATGTCATGCGTATTATCAATGAGCCTACTGCTGCTGCCATTGCCTATGGTCTTGACAAGAAGGCAACAAGTGTTGGCGAGAAGAATGTCTTGATTTTTGATCTCGGTGGTGGTACCTTTGATGTCTCTCTTCTTACTATTGAAGAGGGTATCTTTGAAGTGAAGGCTACCGCTGGAGACACACATCTTGGAGGTGAAGATTTTGACAACAGAATGGTGAACCACTTTGTGCAAGAGTTTAAGAGGAAGAACAAGAAAGACATCTCTGGCAATCCTAGAGCTCTTAGGAGGTTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTTTGTCTTCTACTGCCCAGACCACCATTGAAATCGATTCTCTTTATGAGGGAGTTGATTTCTACACCACCATTACTCGTGCTAGATTTGAGGAGCTCAACATGGATCTTTTTAGGAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAGGGATGCTAAGATGGACAAAAGAAGCGTTGATGATGTTGTCCTTGTTGGTGGTTCCACCAGAATTCCCAAGGTTCAACAACTTCTCCAGGATTTATTCAATGGAAAGGAGCTATGCAAGAGCATTAATCCCGATGAGGCTGTTGCTTACGGTGCTGCAGTCCAGGCTGCAATCTTGAGTGGTGAGGGCAATGAGAAGGTTCAGGACCTTCTTCTTCTTGATGTCACCCCTCTATCCCTCGGTCTCGAGACTGCTGGTGGTGTGATGACTGTCCTGATCCCCAGGAATACCACAATTCCAACAAAGAAGGAACAAGTGTTCTCCACATATTCTGACAACCAGCCTGGTGTGTTGATCCAGGTCTTTGAAGGTGAGAGAACAAGGACAAGGGACAACAATTTGTTGGGCAAATTTGAACTCTCAGGCATTCCTCCAGCTCCCAGGGGTGTTCCACAGATTACAGTGTGCTTTGACATCGATGCCAATGGTATCTTGAATGTCTCTGCTGAGGACAAAACCACTGGCCAGAAGAATAAGATCACCATCACCAATGACAAGGGTAGACTTTCAAAGGAAGATATTGAAAAGATGGTGCAAGAAGCTGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCCAAGAATGCATTGGAAAACTATGCATACAACATGAGGAACACCATCAAGGATGAAAAGATTGCAGAGAAACTTGCTGCAGATGACAAGAAGAAGATTGAAGATGCCATCGATCAAGCTATTCAATGGCTTGACAGCAACCAGCTTGGAGAAGCAGATGAGTTTGAGGACAAAATGAAGGAACTTGAAAGCCTCTGCAACCCAATCATTGCCAAGATGTACCAGGGTGGTGCTGGTCCTGATGTGGGTGGTGCTGCTGATTATGCTGATGCTCCTTCTGGTGGAAGCGGTGCAGGACCCAAGATTGAGGAAGTGGACTAA 2160 0.4542 PPWAHASDQNPTAHSHTKNVKEHSGKTSKPPNLQTSKPYLYNPTFTLNSRVYPFCLLSFFIHRSNSNLNLMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRYSDASVQSDIKLWPFKVISGPAEKPMIQVNYKGEDKQFAAEEISSMVLMKMREIAEAFLGSAVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVDDVVLVGGSTRIPKVQQLLQDLFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIAEKLAADDKKKIEDAIDQAIQWLDSNQLGEADEFEDKMKELESLCNPIIAKMYQGGAGPDVGGAADYADAPSGGSGAGPKIEEVD 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0056 719 MobiDBLite consensus disorder prediction 694 719 - -
Lal20g0056 719 MobiDBLite consensus disorder prediction 1 35 - -
Lal20g0056 719 Gene3D - 616 689 IPR029048 -
Lal20g0056 719 Gene3D - 141 196 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 78 91 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 106 118 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 128 136 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 216 236 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 279 289 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 407 423 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 439 459 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 466 485 - -
Lal20g0056 719 PRINTS 70kDa heat shock protein signature 547 563 - -
Lal20g0056 719 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 461 615 IPR029047 -
Lal20g0056 719 PANTHER HEAT SHOCK PROTEIN 70KDA 71 699 IPR013126 GO:0005524|GO:0140662
Lal20g0056 719 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 613 694 IPR029048 -
Lal20g0056 719 ProSitePatterns Heat shock hsp70 proteins family signature 3. 410 424 IPR018181 -
Lal20g0056 719 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 71 699 - -
Lal20g0056 719 CDD HSPA1-2_6-8-like_NBD 79 457 - -
Lal20g0056 719 Gene3D Actin; Chain A, domain 4 305 388 - -
Lal20g0056 719 Pfam Hsp70 protein 79 688 IPR013126 GO:0005524|GO:0140662
Lal20g0056 719 SUPERFAMILY Actin-like ATPase domain 268 458 IPR043129 -
Lal20g0056 719 Gene3D - 80 454 - -
Lal20g0056 719 Coils Coil 591 611 - -
Lal20g0056 719 ProSitePatterns Heat shock hsp70 proteins family signature 1. 82 89 IPR018181 -
Lal20g0056 719 ProSitePatterns Heat shock hsp70 proteins family signature 2. 273 286 IPR018181 -
Lal20g0056 719 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 462 619 IPR029047 -
Lal20g0056 719 SUPERFAMILY Actin-like ATPase domain 78 261 IPR043129 -
Lal20g0056 719 Gene3D - 262 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0056 Lal-Chr20 380790 383941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0056 71 719 Calmodulin-binding Proteins AT3G12580 92.320 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0056 K03283 - gmx:100804917 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0056 20 380790 383941 Lal20g0056 20 380790 383941 ECH
Lal11g1110 11 14840362 14843837 Lal20g0056 20 380790 383941 LSH
Lal1g1857 1 20842611 20845948 Lal20g0056 20 380790 383941 LSH
Lal20g0056 20 380790 383941 Lal24g0812 24 6442515 6445585 PCT
Lal24g0812 24 6442515 6445585 Lal20g0056 20 380790 383941 PCT