Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0048 ATGAGAAGTTGTCATTTAACAGCACTTATCGTGGATGATGACATGATAGTTCGAATGATTCATCAAAGGATGCTAAACAGTGTTGGGGTGAAAAATGAAGCGGTGGAAAATGGAAAAGAAGCCATAGACCTTCATAATTCTGGACAAAGCTTTGATCTTATTCTCATGGATATAGATATGCCTGTTATGAATGGCATTGAGGTAACAAAGAAGCTAAGATCAATGGGGATTGATAGCATGATTGCTGGTGTATCAGCCCGGTACATAGATGAGCATACACAAGAATTTATTGAAGCTGGATTAGATGAGTACCTTGAGAAGCCCTTAAACATTGCTAAGCTCACTTCAATTATTCACAGGATCAATAAATTTCATATTAGATAA 384 0.3672 MRSCHLTALIVDDDMIVRMIHQRMLNSVGVKNEAVENGKEAIDLHNSGQSFDLILMDIDMPVMNGIEVTKKLRSMGIDSMIAGVSARYIDEHTQEFIEAGLDEYLEKPLNIAKLTSIIHRINKFHIR 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0048 127 ProSiteProfiles Response regulatory domain profile. 7 122 IPR001789 GO:0000160
Lal20g0048 127 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 123 - -
Lal20g0048 127 Pfam Response regulator receiver domain 9 118 IPR001789 GO:0000160
Lal20g0048 127 CDD REC_hyHK_CKI1_RcsC-like 9 118 - -
Lal20g0048 127 SUPERFAMILY CheY-like 6 122 IPR011006 -
Lal20g0048 127 Gene3D - 5 126 - -
Lal20g0048 127 SMART REC_2 6 118 IPR001789 GO:0000160
Lal20g0048 127 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 5 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0048 Lal-Chr20 350911 352147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0048 9 118 Response Regulator Gene Family AT3G04280 47.321 8.84e-28 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal20g0048 Response_reg 7.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0048 - - rcu:8262779 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0048 20 350911 352147 Lal20g0048 20 350911 352147 ECH
Lal11g1108 11 14824248 14825457 Lal20g0048 20 350911 352147 LSH
Lal1g1865 1 20919674 20920787 Lal20g0048 20 350911 352147 LSH