Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0047 ATGGAAGCCAAAAACAAAAACCTATTAGCATCACAAGACATGGCTACTGCTCACTTAACGGCGCTTGTTGTAGATGACAATATGATGAATCGAAAGATTCACCAAAAGTTGTTGAAGAATGCTGGAATCCAAAATCAGGGAGTGGGAAATGGTAAAGAAGCCGTAGACATTCATTGCTATGGACAAATCTTTGACCTAATTCTTATGGACATGGATATGCCCATAATGAATGGCATTCAGGCAACAAAGAAACTACGTTCAATGGGAATTAGTAGTATGATAGTTGGTGTGTCATCACGATCTATGGAATCAGAGATACAACAATTTATGGAAGCAGGGCTTGATGACTATCAAGTTAAACCCTTAACAAAAACTAAGCTTACTTCAATTCTTGATAAGATCAACCATAACTTCACTTAA 420 0.3714 MEAKNKNLLASQDMATAHLTALVVDDNMMNRKIHQKLLKNAGIQNQGVGNGKEAVDIHCYGQIFDLILMDMDMPIMNGIQATKKLRSMGISSMIVGVSSRSMESEIQQFMEAGLDDYQVKPLTKTKLTSILDKINHNFT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0047 139 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
Lal20g0047 139 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Lal20g0047 139 SMART REC_2 19 131 IPR001789 GO:0000160
Lal20g0047 139 Gene3D - 1 138 - -
Lal20g0047 139 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 10 137 - -
Lal20g0047 139 SUPERFAMILY CheY-like 18 134 IPR011006 -
Lal20g0047 139 CDD REC_hyHK_CKI1_RcsC-like 22 131 - -
Lal20g0047 139 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0047 Lal-Chr20 346790 347548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0047 19 138 Response Regulator Gene Family AT3G04280 46.721 1.07e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal20g0047 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0047 - - gmx:100794931 180.259