Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0035 ATGAAGATAATTCCTCAGTTAATAATTTTGTCTCTAATTTTGTGGTGTATACTTGCAGAGATATCAGCAGAGAAAGAAGCAGAGTCATTGATTACATGGATGAAAAGTTTGAACTCTCCAATGATGGCTTCATGGAATCTTAAAAACAACAAAAGCACTAGTCCATGCAACTGGATTGGCATAAAGTGTGATAAAGCTGGCAGTGTTATTGAGATAAAGCTTCCAAATTCAGGCCTAGATGGAACTCTCAACAGGTTTGACTTCTCAGCTTTTCCTAATCTCACTACACTGAATCTCAACTTGAATAACTTTGTTGGAGAGGTTCCATCAGGAATTAAAAACTTAACAAATCTGATAACACTTGACTTGGGTAGCAACAATTTTACCTATCAAATGCCACCAGAAATTGGAAACCTCTTACAGCTACAAGTTCTTATTCTCTCTAACAACTCATTCTTGAATCAAATACCATCTGAGCTTAGTAATTTACAGAACTTATGGCTTCTTGATCTAGGTGGAAACTACTTAGATGATCCTGATCCAACTCACTTTAAGGGCATGGTGTCCTTAAAAGAACTTAACCTCACCTACAACTATTTAAAACAGGTTCCACCTTTTGTTTCTAAATGTCCAAAGCTGATTTCTCTTGATCTATCACTGAACATTATCACTGGCCATATTCCAATAAACTTGTTGGTCACTCCTAAGAACCTCACAATCCTTGTCCTGACAACCAACTTCTTAGAGGGTCCAATTCCTGAAGAGATTAAGAATATTTCAAAGCTCAAACAACTTCAACTTGGACAAAACAAGTTGAATGGTACTATACCAAAAGAGATTGGTCTCTTGTCTTACCTTGAGATTCTTGAATTGCATGAAAATGCTTTTCAAGGTCCAATACCATCATCAATAGGAAATCTGATAAGGCTTCAGAGATTGAACCTTCATTACTCAGGAGTGAATTCCAGCATCCCTGATGAGATAGGCTTCTGTACCAACCTTACATATATTGATATGTCAGTAAATAACCTCACAGGTTTATTGCCTCTTTCAATGTCTTCATTAACAAGGATAAATTATTTGGATATCTCTTATAACCGTTTATCTGGAGAACTCCATTCATCTCTTCTTTCCAATTGGACAAAACTCACTCTTTTACTACTCAATACAAATGAATTGTCAGGAAAAGTTCCCTCTGAGATTGTTTTACTCCACAATCTAACTCACCTCTTCCTTTATGAAAACCAGTTTTATGGACCTATACCTCCCGAAATCGGAAACTTATCAAGCTTAGAATATCTTGATCTGTCTCACAATAACCATTTAAATGGTTCCATCCCTTCAACCATTGGAATGTTACACAACCTCATCAATTTAACTCTGGGCTCAAACAAATTAAGTGGACCAGTCCCTCCAGAAATAGGTGACTTGGAAAGCTTACAGAAGCTGGACTTAAGTGAAAACGATCTTGTAGGAACTTTGCCGCCTGCAATAAATCGTTTGAAGAACCTCAGTCTCATGTATCTTCATACCAACAAATTCTCTGGAACTGTTCCTGAGGATTTTGGACCTGCTTTTTTAACTACTGCAACCTTTTCCAGCAATGGTTTTTCTGGAAAGCTCCCTCCAGGAATATGCAATGGAGGGAACCTTGTTGAATTGACGGCCAATGAAAATAACTTTGATGGTCCAATCCCAGCTACCCTGAGAAACTGCACTGGACTAAGCCGAGTCCGGCTTGAAAACAATCTTCTCAGTGGAGACATTACCAATGCATTTGGTATATATCTAGATCTGGACTACATTGATCTAGGACATAATCAGCTTTCCGGTTCATTATCAAGTAACTGGGGAGAATGCATAAATCTCTCAAGTTTTAGTATATCTTCCAATAAGGTACATGGAAATATTCCTCCAGAGCTTGGAAAACTGCCAAAGCTGCAAAGACTCAACCTCTCAGACAACAATCTCACAGGAAATATCCCCGTGGAGCTTTTTAGCTCATCTTCTTTGCTCCTCACACTAAGTTTGAGCAACAATGACCTCTCAGGTAATATACCTGCAGAGATTGGAGAACTTTCAGAGCTTCTGATTTTGGATTTATCAGCAAACAATTTGAGTGGGCCAATACCAAAGGAAATAGAAAACTGTAACAGTCTTCTGTCCTTGAAATTGAGTATGAACAACTTAGATGGTCATATGCCGCATGAGTTAGGGAATTTGGTGAAGCTGCAGATTCTTTTGGATCTCAGTCATAACTCACTAAATGGTGAGATAATCTCTGAGCTGGATAAATTGACAACCCTTGAGGTTTTGAATCTTTCTCACAACCAGCTTTCTGGTACAATACCTTCTAGTCTTGAAGGACTTATAAGTCTTCAAATAGTTGATATATCCTACAACAAACTTGAAGGTCCCCTCCCAGACCAAGTCGCTTTTCATAATGCTTCAGCAGATGAACTGATGGGTAATGCTGGTTTGTGTAAGGAGCCTGGGTCGCATGATGGAAATGCAAATTTGAGCCCTTGTGGTGGAGACAAAAGCAAGCAATCAAGGAAGCATACGGTAATAATTGCAGTAGTCGTTCCACTTGCTGCTTTAGTCATTCTATTGGTTTTGCTCCGAATCTTCGTTGTCAGGCATTATCGCAAAGTTGTTAAAGATGAAAAGAACAAGAGTTCAAAGGGAATGAACTCATTCTTCATATGGAATCATAGGACGGAATTAGAGTTCAAGGATATACGTACTGCAACTGAGGATTTTAGTGACAAGTATTCTATAGGGATAGGAGGACAGGGCTGTGTCTACAAGGCAATGCTTCCATCAGGTGAAATCTTCGCAGTGAAGCGTCTTCATCAACATGAGGAAAAGGACTTCTCTGGACAACAGGAAAAGAATTTCACATCTGAGATCCATGCATTAACTAATATCCGCCATCGGAATATTATAAAAATGTGTGGCTTCAGTTACTGGGACAGGTCCATATTTTTCATATATGAGTATGTAGAAAGAGGCTCTTTAGGAATGCTACTGAAGAAGGATGAGGAGGCAAAGAACTTGACCTGGGATATCAGGTTAAACATGATAAAAGGACTAGCAAATGCATTATCTTACCTGCACCATGATTGCAAACCTATCATTGTTCACCGAGACATAACTGTAAACAATGTTCTTGTGGACTCAGATTTAGAGTCCAAGATTTCTGACTTTGGAACAGCAAGGTTGCTACAAGATGGAGAATCAAACTGGACAGCTCCTGCTGGATCATATGGCTATATTGCACCAGAGCTTGCATTTACAATGAAGGTGACAGAAAAATGTGATGTATACAGCTTCGGGATTGTTGCATTAGAAATTCTGGTAGGGAAGTACCCTAATGAGCTCCTATTGAGTCTAGAGTCTGGGGGATTTGATCAGCACCTTGTAGATGTCTTAGATAAGAGACTAGCTCCTCCAGCGTCTCTTTCCGGCCAACTCCTAATATTGGTTGCAACTCTGATTCTAAAATGTATTCGTGAAAATCCTTTGTCGAGACCAACCATGAATCAAGTGTCCCAAGCACTTTTATCACCTGCTGGTTGCTCAGACTATGTCCCTTTTAGTAAGATCACACTTCTGGATTTACTTCACATGTAA 3636 0.3911 MKIIPQLIILSLILWCILAEISAEKEAESLITWMKSLNSPMMASWNLKNNKSTSPCNWIGIKCDKAGSVIEIKLPNSGLDGTLNRFDFSAFPNLTTLNLNLNNFVGEVPSGIKNLTNLITLDLGSNNFTYQMPPEIGNLLQLQVLILSNNSFLNQIPSELSNLQNLWLLDLGGNYLDDPDPTHFKGMVSLKELNLTYNYLKQVPPFVSKCPKLISLDLSLNIITGHIPINLLVTPKNLTILVLTTNFLEGPIPEEIKNISKLKQLQLGQNKLNGTIPKEIGLLSYLEILELHENAFQGPIPSSIGNLIRLQRLNLHYSGVNSSIPDEIGFCTNLTYIDMSVNNLTGLLPLSMSSLTRINYLDISYNRLSGELHSSLLSNWTKLTLLLLNTNELSGKVPSEIVLLHNLTHLFLYENQFYGPIPPEIGNLSSLEYLDLSHNNHLNGSIPSTIGMLHNLINLTLGSNKLSGPVPPEIGDLESLQKLDLSENDLVGTLPPAINRLKNLSLMYLHTNKFSGTVPEDFGPAFLTTATFSSNGFSGKLPPGICNGGNLVELTANENNFDGPIPATLRNCTGLSRVRLENNLLSGDITNAFGIYLDLDYIDLGHNQLSGSLSSNWGECINLSSFSISSNKVHGNIPPELGKLPKLQRLNLSDNNLTGNIPVELFSSSSLLLTLSLSNNDLSGNIPAEIGELSELLILDLSANNLSGPIPKEIENCNSLLSLKLSMNNLDGHMPHELGNLVKLQILLDLSHNSLNGEIISELDKLTTLEVLNLSHNQLSGTIPSSLEGLISLQIVDISYNKLEGPLPDQVAFHNASADELMGNAGLCKEPGSHDGNANLSPCGGDKSKQSRKHTVIIAVVVPLAALVILLVLLRIFVVRHYRKVVKDEKNKSSKGMNSFFIWNHRTELEFKDIRTATEDFSDKYSIGIGGQGCVYKAMLPSGEIFAVKRLHQHEEKDFSGQQEKNFTSEIHALTNIRHRNIIKMCGFSYWDRSIFFIYEYVERGSLGMLLKKDEEAKNLTWDIRLNMIKGLANALSYLHHDCKPIIVHRDITVNNVLVDSDLESKISDFGTARLLQDGESNWTAPAGSYGYIAPELAFTMKVTEKCDVYSFGIVALEILVGKYPNELLLSLESGGFDQHLVDVLDKRLAPPASLSGQLLILVATLILKCIRENPLSRPTMNQVSQALLSPAGCSDYVPFSKITLLDLLHM 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0035 1211 Gene3D Transferase(Phosphotransferase) domain 1 1002 1193 - -
Lal20g0035 1211 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1047 1059 IPR008266 GO:0004672|GO:0006468
Lal20g0035 1211 SMART LRR_sd22_2 331 352 - -
Lal20g0035 1211 SMART LRR_sd22_2 453 479 - -
Lal20g0035 1211 SMART LRR_sd22_2 741 765 - -
Lal20g0035 1211 SMART LRR_sd22_2 693 719 - -
Lal20g0035 1211 SMART LRR_sd22_2 235 261 - -
Lal20g0035 1211 SMART LRR_sd22_2 404 436 - -
Lal20g0035 1211 SMART LRR_sd22_2 766 792 - -
Lal20g0035 1211 SMART LRR_typ_2 766 790 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 91 114 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 187 210 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 307 331 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 477 501 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 355 379 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 259 283 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 644 668 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 693 717 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 115 138 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 139 163 IPR003591 -
Lal20g0035 1211 SMART LRR_typ_2 404 428 IPR003591 -
Lal20g0035 1211 Gene3D Ribonuclease Inhibitor 277 379 IPR032675 -
Lal20g0035 1211 Gene3D Ribonuclease Inhibitor 22 183 IPR032675 -
Lal20g0035 1211 PRINTS Leucine-rich repeat signature 480 493 - -
Lal20g0035 1211 PRINTS Leucine-rich repeat signature 766 779 - -
Lal20g0035 1211 PANTHER - 7 1208 - -
Lal20g0035 1211 Pfam Protein kinase domain 923 1186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0035 1211 Gene3D Ribonuclease Inhibitor 184 276 IPR032675 -
Lal20g0035 1211 ProSiteProfiles Leucine-rich repeat profile. 646 668 IPR001611 GO:0005515
Lal20g0035 1211 Gene3D Phosphorylase Kinase; domain 1 881 1001 - -
Lal20g0035 1211 SUPERFAMILY L domain-like 52 370 - -
Lal20g0035 1211 Pfam Leucine rich repeat 430 490 IPR001611 GO:0005515
Lal20g0035 1211 Pfam Leucine rich repeat 165 221 IPR001611 GO:0005515
Lal20g0035 1211 Gene3D Ribonuclease Inhibitor 497 838 IPR032675 -
Lal20g0035 1211 SUPERFAMILY L domain-like 375 663 - -
Lal20g0035 1211 SUPERFAMILY L domain-like 598 834 - -
Lal20g0035 1211 SUPERFAMILY Protein kinase-like (PK-like) 895 1188 IPR011009 -
Lal20g0035 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 7 1208 - -
Lal20g0035 1211 ProSiteProfiles Leucine-rich repeat profile. 189 210 IPR001611 GO:0005515
Lal20g0035 1211 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Lal20g0035 1211 ProSiteProfiles Protein kinase domain profile. 921 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0035 1211 Gene3D Ribonuclease Inhibitor 384 492 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0035 Lal-Chr20 232465 236533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0035 607 812 Receptor kinase-like Gene Family AT4G08850 33.188 4.49e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lal20g0035 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0035 - - ccaj:109803789 1577.38