Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0028 ATGCATATAGGTAAAATGGATACAACTTCAAAGAAATGTCTTATCAACAGCATTTCTCGATTTATTCATCTAGTTTCTTGCCAAAAAGTGAAACCTATGCCCCTTCAGAATAACTGTAATAATATGGTTGGTGTTTTGAAGTGCTTGAAACCAGTGCTTGATGACGTTGTGGATTACAAAATCCCTTTGGATGAAAATCTAAATACAGAATGTGAAGAACTGGATATGCAAGTTAATGAAGCTAGAGAGTTCATCGAAAAATTGAGTTCAAAGATGAGCAAGATTCACAATGTTCTTCAGAGTGGGGAAATGTTGCTTAAGTTACAAAGTGCTTCACTTGAGATTTGTCGCATGCTAGTTAGATCCCTAAACTCACCTCCATATACTTCAGGTTTGGCTAATCTTCAGGAACTTCAGTGTCTTAAGAAGGAATCAGCAGTGGTTTATATAGAAAACGCACTTAGAAACCAAAGGGATAATATCAAACCTTGCTATGAAAATCTAAAGGAAATCATTGATTTACTTGAACTCACATCAAACCAGGAGCTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAACGCTGAAGTCAATAAAATGAAAGGGGAGTTGGGTGAAACTAACCAAATTGTGAATCTTGTCTGTGACTTACGTGATTATGCGATGAAAATTGAGTGCCCTGAAATCAAAAGTGGTGTCTCAGTCCCACCATACTTCCGATGTCCATTATCGTTGGAACTCATGCTGGATCCTGTTATCTTAGCTTCAGGTCAGACATACGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGTTAACTGTTTGTCCAAAGACTCATCAGAGACTTATGCATACAAATCTGATTCCTAATTATACTGTGAAGGCTATGATAGTGAATTGGTGTGAGGAAAATAATGTCAAACTTCTTGATAACTCGAACAATAATTGTTCACATATTTCACCCCCCTCGGATCATTTGCCCCAAGATTTAGACGGTGCATGTAGTTTTGGATCTTCACGTAGTAGCAATTCCACTCCGAAATCGTCTCTTCAAAGTGGAAATGCATTTGAGAAGCAAAAGGGTGACAGCCCTTTCAGATTAAGTGGAGAATCCAATGGACTTCAGAGTGGAGAGACAGAAAAGTTTGAGCAACAATCCTCAGCACCTTCGTGTAGTCACAGCAGAAGTGAATCATTTACAAGTTCTATTTCTAGTGCTGATTATGTACTTCCAGTTTCAAAAGAGGCATCAAGGGTATCTAGTAAGCATCAAAATGTGGAGTTTTCTGGAGAAATCACAAATCGGTGTCCTGCTTTGCCTGCAAGTAAAGAATTGGTGATTTCTCCTTCATTATCAGGAAAGCTATTTCAAAGCCCGGGATCAAAAAATGGAGGGACGCAGGATGGAAATAATTATAATAAGAATGATAATATTATCATTCATAGTCATTCAAAAGTTGATTCTCATCCTGTTTCCAACTTACAATCTGATGAATTGAGCCCCATATCTCATGTCAAAAAGTTGATCGGAGACCTTCAGAATCATTCAAATGTAGTACAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACGAAGCATGACATGGAAAACCGCATCATTGCAGGGAAGAGTGGAGCTATCACGCCTTTACTTTCGTTGCTATATTCGGATGTGAAGATAACACAAGAGCATGCTGTAACGGCGGTGCTGAATTTGTCGATAAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCCATAGAGCCACTTATCCATGTTTTGAAGACAGGAAATGACGGTGCCAAGGAGAATTCTGCTGCAGCCCTATTCAGCCTCTCTGTAATAGAAAACAATAAGCCGAAAATCGGACGTTCTGGTGCAGTTAAAGCTTTGGTGGAACTTCTAGCCTCAGGAACTCTCAGGGGAAAGAAAGATGCTGCTACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGTATTGTTCAAGCTGGAGCAGTGAAGTTTCTGGTTCTGCTGTTGGACCCTGAATGTGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCGACGATTACAGAGGGTCAACTAGAAATTGTGAGGGAAGGGGGCATACCCTTGCTAGTTGAAATTATTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATTCTCTTGCAACTATGTCTTCATAGTCCCAAGTTTTGTACCTTGGTTCTGCAAGAAGGAGCTGTGCCTCCCCTAGTTGCAATATCTCAGTGTGGTACACCAAGAGCTAGAGAAAAGGCACAACAGCTTCTCAGTCATTTTCGTAATCAGCGTGAAGGTGCTAAAGGGAAGGGGAAATCATGA 2382 0.4034 MHIGKMDTTSKKCLINSISRFIHLVSCQKVKPMPLQNNCNNMVGVLKCLKPVLDDVVDYKIPLDENLNTECEELDMQVNEAREFIEKLSSKMSKIHNVLQSGEMLLKLQSASLEICRMLVRSLNSPPYTSGLANLQELQCLKKESAVVYIENALRNQRDNIKPCYENLKEIIDLLELTSNQELLKESIAVEKERLNAEVNKMKGELGETNQIVNLVCDLRDYAMKIECPEIKSGVSVPPYFRCPLSLELMLDPVILASGQTYERQSIQKWLDHGLTVCPKTHQRLMHTNLIPNYTVKAMIVNWCEENNVKLLDNSNNNCSHISPPSDHLPQDLDGACSFGSSRSSNSTPKSSLQSGNAFEKQKGDSPFRLSGESNGLQSGETEKFEQQSSAPSCSHSRSESFTSSISSADYVLPVSKEASRVSSKHQNVEFSGEITNRCPALPASKELVISPSLSGKLFQSPGSKNGGTQDGNNYNKNDNIIIHSHSKVDSHPVSNLQSDELSPISHVKKLIGDLQNHSNVVQTAAAEELRLLTKHDMENRIIAGKSGAITPLLSLLYSDVKITQEHAVTAVLNLSINEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKPKIGRSGAVKALVELLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPECGMVDKAVALLANLSTITEGQLEIVREGGIPLLVEIIESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVAISQCGTPRAREKAQQLLSHFRNQREGAKGKGKS 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0028 793 Coils Coil 185 212 - -
Lal20g0028 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 589 631 IPR000225 GO:0005515
Lal20g0028 793 Gene3D - 582 789 IPR011989 -
Lal20g0028 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 671 712 IPR000225 GO:0005515
Lal20g0028 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 311 IPR013083 -
Lal20g0028 793 SUPERFAMILY RING/U-box 235 311 - -
Lal20g0028 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 590 IPR000225 GO:0005515
Lal20g0028 793 PANTHER U BOX DOMAIN-CONTAINING 11 788 - -
Lal20g0028 793 SUPERFAMILY ARM repeat 507 780 IPR016024 -
Lal20g0028 793 Pfam U-box domain 237 308 IPR003613 GO:0004842|GO:0016567
Lal20g0028 793 Coils Coil 71 91 - -
Lal20g0028 793 MobiDBLite consensus disorder prediction 368 399 - -
Lal20g0028 793 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 788 - -
Lal20g0028 793 SMART arm_5 700 740 IPR000225 GO:0005515
Lal20g0028 793 SMART arm_5 660 699 IPR000225 GO:0005515
Lal20g0028 793 SMART arm_5 619 659 IPR000225 GO:0005515
Lal20g0028 793 SMART arm_5 578 618 IPR000225 GO:0005515
Lal20g0028 793 SMART arm_5 537 577 IPR000225 GO:0005515
Lal20g0028 793 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Lal20g0028 793 MobiDBLite consensus disorder prediction 322 399 - -
Lal20g0028 793 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Lal20g0028 793 Pfam Armadillo/beta-catenin-like repeat 539 576 IPR000225 GO:0005515
Lal20g0028 793 Pfam Armadillo/beta-catenin-like repeat 578 617 IPR000225 GO:0005515
Lal20g0028 793 Pfam Armadillo/beta-catenin-like repeat 622 658 IPR000225 GO:0005515
Lal20g0028 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 630 672 IPR000225 GO:0005515
Lal20g0028 793 Gene3D - 497 581 IPR011989 -
Lal20g0028 793 MobiDBLite consensus disorder prediction 337 361 - -
Lal20g0028 793 CDD RING-Ubox_PUB 241 283 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0028 Lal-Chr20 201141 205968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0028 6 793 U-box Gene Family AT3G54790 52.369 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0028 - - gmx:100804684 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0028 20 201141 205968 Lal20g0028 20 201141 205968 ECH