Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0023 ATGGAATTTGATTATTCTCTCTACCAATACCAAAGCCTTCATTTCTTCCCTTCAAACCATTCCTCTAATTTCTCATGGGATGATGACTTACTCATTTTCTTAAACAATAACAACAACCATACTCAAACCAAAGAATCATCCTCCACAAAATCCAACTCATCAGGCTCTCAAGGATTGGAGATAGTAAATATAGATACTCCTATCCCCACAAATGGAGAAGTTGTTTCCAATGCAACTAATGCACAAATGAGACAAATTGAGGCACCACCACCCCCACTTTCAACACCACTATCACTATCACTCCCTTCTTCTTCTTCTCCACAAATATTTAGAGGAGTAAGGAGAAGGCCATGGGGTAAATATGCTGCTGAAATAAGGGACTCAACAAGGAATGGAGTTAGAGTGTGGATAGGAACTTTTGACACAGCCGAAGAAGCAGCATTAGCTTATGATCAAGCAGCTTTTTCTACAAGAGGTTCATTGGCAGTGCTTAATTTCCCAATGGAAGTTGTAAGGGAATCCCTTAAAGACATGTCAAGTAATTGTAAGCCAAATTCATGTTTGGAAGATGGTTCTTTCACTTCACCTGTTTTGGCACTCAAAAGAAAGCATAGCATGAGAAGAAAGTCAAGTAGCAATAAGAAGACCAAAAGGGTTCACTATAATAAGGATCAATTGGACACAAGTGGATCCAAAAATGTGCTGAATAATGATTATAGGCCAACAATAGCAAATCCAAATCTCAATATCGAAGACATACACAAAAGTGAAGAAAACATTAAGAAGCACAACCTTGAGGACAAGGTTGCTTTCCAAGGGTTGAGCAATGTTGGCCGTGTGAGTCCAATAACATTGTTGAGGGTGCTACGTCTAGATTCAAGAGAATAA 888 0.3885 MEFDYSLYQYQSLHFFPSNHSSNFSWDDDLLIFLNNNNNHTQTKESSSTKSNSSGSQGLEIVNIDTPIPTNGEVVSNATNAQMRQIEAPPPPLSTPLSLSLPSSSSPQIFRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEEAALAYDQAAFSTRGSLAVLNFPMEVVRESLKDMSSNCKPNSCLEDGSFTSPVLALKRKHSMRRKSSSNKKTKRVHYNKDQLDTSGSKNVLNNDYRPTIANPNLNIEDIHKSEENIKKHNLEDKVAFQGLSNVGRVSPITLLRVLRLDSRE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0023 295 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 235 - -
Lal20g0023 295 MobiDBLite consensus disorder prediction 202 221 - -
Lal20g0023 295 CDD AP2 108 167 IPR001471 GO:0003700|GO:0006355
Lal20g0023 295 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Lal20g0023 295 MobiDBLite consensus disorder prediction 202 216 - -
Lal20g0023 295 SMART rav1_2 109 173 IPR001471 GO:0003700|GO:0006355
Lal20g0023 295 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Lal20g0023 295 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Lal20g0023 295 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700|GO:0006355
Lal20g0023 295 PANTHER DNA-BINDING DOMAIN 19 235 IPR044808 GO:0003700|GO:0009873
Lal20g0023 295 SUPERFAMILY DNA-binding domain 109 169 IPR016177 GO:0003677
Lal20g0023 295 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0023 Lal-Chr20 183504 184888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0023 110 215 AP2-EREBP Transcription Factor Family AT2G31230 69.811 5.24e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal20g0023 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0023 K14516 - gmx:100784784 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0023 20 183504 184888 Lal20g0023 20 183504 184888 ECH
Lal13g1016 13 7471712 7472155 Lal20g0023 20 183504 184888 PCT