Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0011 ATGGACAATCCCTCTCACGGCGCCGCCGGAGCCCTCCGTTCCCGGAGCTCCCAATCCACATCCCCTTCCCACTCTGCCTCCGCCTCCGCCACCTCTTCCATCCACAAACGTAAACTCCCCTCCTCATCTGACGGCCACGCTCCTCCCTTCCCTCCTTCCTCCTTCGACGGTGCCCTCACCTCCAACGACGACCTCGACAGCATCTCCGCCCGAGGAAACGACTCCGTATCTGAAGACGACTCCGAAGAAGACGCCGTCGTCGATGACGATGAAGACGAGTTCAATCACGACCACGATTCCTCGATGCGTACCTTCACAGCTGCAAGGCTCGATAATAGCAGTAACAGCAACAACCCTAGCTCCGCTCCGAGGAATAGTAAGCTGAAGAGTGATAATAAGAATACTAATTGCGGTGTTAAGATTGAGAATTGTGATGGCGCCGTAGCCAAAGAAGGTTCAGTACCGGGGATTGTGGTGAAGGAGGACGCGACTTTGATATTTACTGATAATTTACAGACCAGTGGGGCTTACACTGCTAGAGAAGAGAGTCTTAAGAAAGAGGAGGAAGCAGGAAGGCTCAAATTTGTATGCCATTCAAATGATGGTATTGATGATCATATGGTTTGGTTGATAGGGTTGAAGAATATATTTTCTAGACAACTTCCGAATATGCCCAAGGAATACATTGTCAGACTTGTTATGGATAGGAGCCATAAGTCTGTGATGGTTATAAGGCGTAATCACGTTGTTGGAGGCATTACATATCGCCCATATGTAACCCAGAAGTTTGGTGAGATAGCCTTCTGTGCAATTACAGCTGATGAGCAAGTTAAAGGTTATGGTACCAGATTGATGAATCACTTAAAACAGTTTGCACGCAATTTAGATGGGCTAACACATTTCCTCACATATGCTGACAATAATGCCGTTGGCTACTTCATCAAACAGGGATTTACAAAAGAGATTCACTTGGACAAAGATCGATGGCAAGGTTATATAAAGGATTACGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTTCCTTACACTGATTTGTCAACTATGATACGTCGACAAAGGCAGTTTGCATTATTTGAGGCAATTGATGAAAAGATCAGAGAGCTGTCAAACTGTCACATTGTTTATCCTGGAATTGATTTTCAGAAGAAGGAAGCTGGTATTCCTAAAAAGATTATCAAAGACATCCCTGGTTTAAGGGAGGCTGGATGGACTTCCGATCAGTGGGGTCATTCACGTTTCAGAACTTCAAGTGCTTCTACAGACAGTGCTGCAAATCCAAAACATTTAACTGCTTTTATGCGTTCTCTTCTAAAGGCAAGTTTGCTTAGATGTTTGTTGTTCGCCTTTAATTCAATGCATGACCATGCTGATGCTTGGCCATTCAAGGAACCAGTTGATGCACGGGATGTTCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGAGTAAGAGGGTGGAGTCAGAGCAATATTATGTCACATTTGAGATGTTTGTTGCGGATGTCAGAAGAATGTTTTCGAATGCACGCACTTACAACTCTCCAGAAACCATTTATTACAAATGTTCTACAAGGCATGCTAGAAACCCACTTTCAAAGCAAAGTGACATTGGGACTCCACTCTGGTACCAAAATCCAATAGGGACACTTCAGTAG 1698 0.4435 MDNPSHGAAGALRSRSSQSTSPSHSASASATSSIHKRKLPSSSDGHAPPFPPSSFDGALTSNDDLDSISARGNDSVSEDDSEEDAVVDDDEDEFNHDHDSSMRTFTAARLDNSSNSNNPSSAPRNSKLKSDNKNTNCGVKIENCDGAVAKEGSVPGIVVKEDATLIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCHSNDGIDDHMVWLIGLKNIFSRQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYVTQKFGEIAFCAITADEQVKGYGTRLMNHLKQFARNLDGLTHFLTYADNNAVGYFIKQGFTKEIHLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQFALFEAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKIIKDIPGLREAGWTSDQWGHSRFRTSSASTDSAANPKHLTAFMRSLLKASLLRCLLFAFNSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFVADVRRMFSNARTYNSPETIYYKCSTRHARNPLSKQSDIGTPLWYQNPIGTLQ 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0011 565 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 209 347 IPR016181 -
Lal20g0011 565 Pfam Acetyltransferase (GNAT) family 240 318 IPR000182 GO:0016407
Lal20g0011 565 Gene3D - 189 353 - -
Lal20g0011 565 PANTHER GH11602P 1 546 IPR037800 GO:0004402
Lal20g0011 565 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 201 347 IPR000182 GO:0016407
Lal20g0011 565 Gene3D - 417 547 IPR036427 GO:0005515
Lal20g0011 565 PANTHER BNAC04G26160D PROTEIN 1 546 - -
Lal20g0011 565 MobiDBLite consensus disorder prediction 105 135 - -
Lal20g0011 565 ProSitePatterns Bromodomain signature. 468 526 IPR018359 -
Lal20g0011 565 MobiDBLite consensus disorder prediction 77 95 - -
Lal20g0011 565 Pfam Bromodomain 461 538 IPR001487 GO:0005515
Lal20g0011 565 MobiDBLite consensus disorder prediction 55 74 - -
Lal20g0011 565 ProSiteProfiles Bromodomain profile. 463 534 IPR001487 GO:0005515
Lal20g0011 565 MobiDBLite consensus disorder prediction 10 38 - -
Lal20g0011 565 PRINTS Bromodomain signature 466 479 IPR001487 GO:0005515
Lal20g0011 565 PRINTS Bromodomain signature 480 496 IPR001487 GO:0005515
Lal20g0011 565 PRINTS Bromodomain signature 515 534 IPR001487 GO:0005515
Lal20g0011 565 SMART bromo_6 444 553 IPR001487 GO:0005515
Lal20g0011 565 SUPERFAMILY Bromodomain 446 539 IPR036427 GO:0005515
Lal20g0011 565 MobiDBLite consensus disorder prediction 1 135 - -
Lal20g0011 565 CDD NAT_SF 240 295 - -
Lal20g0011 565 CDD Bromo_gcn5_like 439 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0011 Lal-Chr20 110576 119274 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lal20g0011 Bromodomain 6.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0011 K06062 - gmx:100791610 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1909 1 21313578 21321218 Lal20g0011 20 110576 119274 LSH