Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0010 ATGAACTATTTATACCCAGTGAAAGAAGAATACTGGGAACAACCATCATCATCATCATCATCAATATATCAGATAGAAAATGGTGTTGATGAATCAATGGTTCCTCTTCCTCCTCCACAACCAATGGAGGGTCTTCATGAAGCAGGTCCACCTCCATTTCTAACAAAAACCTTTGATGCAGTGGATGACCCAACCACCAATTACATAGTTTCATGGAACAGAAATGGTGCTAGCTTTGTTGTATGGGACCCACATGCTTTCTCTAGGAGACTCCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGATTCCTTAGAGGGCAAAGGAACCTATTATCTAACATAAGGAGAAGAAAAGCACCTTCACAACAAGGCCATTGTGTTGAAGTTGGAAGTTTTGGATTAGACGAAGAGATCGATCGTTTGAGGCGCGATAAACAAGTGTTAATGATGGAGCTTGTGAAGCTTAGACATCAGCAACAGAATACAAGATCTTATCTTCAGGAAATGGAGGAAAGGTTACAAGGGACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTAGCTAGAGCTATGAGAAATCCAACTTTTATTCAGCAACTAGTTCAACAGAAAGATAAGAGAAAGGAACTTGAAGACGCCATCACTAAGAAGAGAAGAAGACCAATTGATGAAGGACCTAGTAGTAGTGTGAAAGTTGAGGCAGTGGAGTTTGGTGAATATGGATATGGAGTGTCAGAACTTGAAATGCTGGCCATGGAAATGCAAGGTTTTGATAGAGGGATGAGAGAACATGAGGATGGACATCATGAGGCACTAGAAGAGGAGTCACAAGAGAGGTTGAATAAGGAACTGGATGAAGGGTTTTGGGAAGAACTTTTCAGTGAGAATTTTGAGAGTGAACCAGACATTCCAATCTGTCAAGGTGATCAAGATGAAGATGTAAATGTTTTGGGTAGTCGCTTAGGTTATTTGGGTTCAAGTCCTAAATGA 1065 0.4009 MNYLYPVKEEYWEQPSSSSSSIYQIENGVDESMVPLPPPQPMEGLHEAGPPPFLTKTFDAVDDPTTNYIVSWNRNGASFVVWDPHAFSRRLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGQRNLLSNIRRRKAPSQQGHCVEVGSFGLDEEIDRLRRDKQVLMMELVKLRHQQQNTRSYLQEMEERLQGTEMKQQQMMAFLARAMRNPTFIQQLVQQKDKRKELEDAITKKRRRPIDEGPSSSVKVEAVEFGEYGYGVSELEMLAMEMQGFDRGMREHEDGHHEALEEESQERLNKELDEGFWEELFSENFESEPDIPICQGDQDEDVNVLGSRLGYLGSSPK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0010 354 SMART hsfneu3 49 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal20g0010 354 Gene3D - 45 143 IPR036388 -
Lal20g0010 354 Pfam HSF-type DNA-binding 53 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal20g0010 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 344 IPR027725 -
Lal20g0010 354 PRINTS Heat shock factor (HSF) domain signature 53 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal20g0010 354 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal20g0010 354 PRINTS Heat shock factor (HSF) domain signature 104 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal20g0010 354 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 19 344 - -
Lal20g0010 354 Coils Coil 225 245 - -
Lal20g0010 354 ProSitePatterns HSF-type DNA-binding domain signature. 92 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal20g0010 354 Coils Coil 163 183 - -
Lal20g0010 354 SUPERFAMILY "Winged helix" DNA-binding domain 49 142 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0010 Lal-Chr20 108400 109943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0010 34 352 HSF AT3G22830 54.324 3.29e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal20g0010 HSF_DNA-bind 6.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0010 K09419 - gmx:100794264 525.013