Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0005 ATGAGCAGTTATCATCACATGAATCGTGAAGAGAGACACAGAGGTATCAAAAGAAAGCCCCCAGATTTTGATCGACGCCATCAACACGGTTCTAACAATCTGAATTCTAGACCTTATGATACAGACTTGCTTCCTCCCGGGTGGTTAGACTGCCCACCACATGGTCAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAGTCTTTCAATGATTACATTCCACGTCAAAAATATACTCCCCAGCAAGCAATTCTTCAACAACGAGTTTTGGGTAGAGAACTTGGTTTAGTGATTGATTTAACAAATACTAATCGTTACTATCCAGTGTCAGACTGGACAAGAGAAGGTGTTCGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCTGTACCTGATAATGAATCTGTAAAAATGTTTTGTGACGAGGTTCTTGATTTTCGCTCTCAAAGAACCGACACAGAGAAATATATACTTGTACATTGCACACATGGGCACAATCGCACAGGTTATATGATTGTTCATTTTCTTGTGCGTACAGAATCAATTTCTGTCACCGAGGCAATAAATAAATTTGCTAGGGCACGCCACCCAGGAATTTACAAGCAGGACTACATCGACAACCTATACATGTTTTATCGTGAAAAGAAGCCTGAAGATCTTGTATGTCCTCAAACTCCAGAATGGAAGAGATTTTCTAACCCTGATTTTCATGGTGTGGCTGTTCCTTCTGTTGACAATAATGGAGATATTCCTCAGCAGAAGAATATCGTGAGGAATGAATTATTGACAAATGATGATGTTTTGGGAGATCCAATTCCTCCAAACCAGCTGTATAAAATGCAAGAACTTTGTTACCAACTGCTCAAGTTGGGCACAAAGGGAAGAGGACATCAAATGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGATAATCTGCAACTCTTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGAACACGATATATGATGATGATTACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCTTTTTAGAAGAATTGATATGCGTTTTCCTTGCAGATACTCCAATGGGGATACACCTGAGAGGAATCATCACTACACATTACTTGATGGGGAGATGATTATTGACTTGGATCCACAAACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATAGCAATAAATCAAGTCTCTTTGACAGAGCTGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGACTCTCTCCAAGAGTATAAATCCTCATTACAGATATGACCTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTCCTATCTACTGTGTCAAAGCTCCTTGATAAATTCATTCCACAACTCTCACATTCAGCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGAACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTGTGTGAGGTTGGAGCTGGAAATCGTCCCCTGCTCTTTCTGTTTGAACGTGGGGTGAAGAAGTTAATGGAAGGGAGTAGTGTTATCCTTCAAGGTGATGCTTCAGATATTTCTTCCTATTCAGGGAGAATCATTGAGTGCTCATGGGATCCTGTAGAGCATCATTGGATTTGTATGCGGGTCAGAATTGACAAAGCAACCCCAAATGATATCAATACCTACAGAAAGGTAATGCGAAGCATAAGGGATAACATTACACAAGATGTGCTGTTGAACGAGATCAATGAGATCATTAGCCTACCTTTGTATGCAGACAGAATACAAAGAGATATCAAGGCTCACCAGCATATGCTTTCATCACGACGCAAGTGA 1914 0.4054 MSSYHHMNREERHRGIKRKPPDFDRRHQHGSNNLNSRPYDTDLLPPGWLDCPPHGQELGCIIPSKVPLGESFNDYIPRQKYTPQQAILQQRVLGRELGLVIDLTNTNRYYPVSDWTREGVRHVKIRCKGRDSVPDNESVKMFCDEVLDFRSQRTDTEKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFARARHPGIYKQDYIDNLYMFYREKKPEDLVCPQTPEWKRFSNPDFHGVAVPSVDNNGDIPQQKNIVRNELLTNDDVLGDPIPPNQLYKMQELCYQLLKLGTKGRGHQMFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMMITGDGCYLIDRKFLFRRIDMRFPCRYSNGDTPERNHHYTLLDGEMIIDLDPQTHKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMERETLSKSINPHYRYDLEPFSVRRKGFWFLSTVSKLLDKFIPQLSHSADGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGNRPLLFLFERGVKKLMEGSSVILQGDASDISSYSGRIIECSWDPVEHHWICMRVRIDKATPNDINTYRKVMRSIRDNITQDVLLNEINEIISLPLYADRIQRDIKAHQHMLSSRRK 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0005 637 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 140 209 IPR000387 GO:0016311|GO:0016791
Lal20g0005 637 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 232 IPR029021 -
Lal20g0005 637 Pfam Dual specificity phosphatase, catalytic domain 96 216 IPR000340 GO:0008138|GO:0016311
Lal20g0005 637 SUPERFAMILY Nucleic acid-binding proteins 508 622 IPR012340 -
Lal20g0005 637 MobiDBLite consensus disorder prediction 1 31 - -
Lal20g0005 637 CDD RNA_5'-triphosphatase 47 213 - -
Lal20g0005 637 ProSitePatterns Tyrosine specific protein phosphatases active site. 162 172 IPR016130 GO:0016311|GO:0016791
Lal20g0005 637 SMART dsp_5 77 217 IPR020422 GO:0006470|GO:0008138
Lal20g0005 637 CDD Adenylation_mRNA_capping 278 506 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lal20g0005 637 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 292 506 - -
Lal20g0005 637 PIRSF mRNA_capping_HCE 31 637 IPR017074 GO:0004484|GO:0006370|GO:0140818
Lal20g0005 637 PANTHER MRNA-CAPPING ENZYME-LIKE 5 637 - -
Lal20g0005 637 Gene3D DNA ligase/mRNA capping enzyme 266 505 - -
Lal20g0005 637 Gene3D Protein tyrosine phosphatase superfamily 22 238 IPR029021 -
Lal20g0005 637 Pfam mRNA capping enzyme, C-terminal domain 550 605 IPR013846 -
Lal20g0005 637 Gene3D - 545 613 IPR012340 -
Lal20g0005 637 MobiDBLite consensus disorder prediction 1 39 - -
Lal20g0005 637 Pfam mRNA capping enzyme, catalytic domain 307 505 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lal20g0005 637 PANTHER MRNA-CAPPING ENZYME 5 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0005 Lal-Chr20 51665 59674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0005 33 627 Protein tyrosine phosphatase (PTP) family AT3G09100 61.028 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0005 K13917 - gmx:100778292 1112.83