LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal20g0005	ATGAGCAGTTATCATCACATGAATCGTGAAGAGAGACACAGAGGTATCAAAAGAAAGCCCCCAGATTTTGATCGACGCCATCAACACGGTTCTAACAATCTGAATTCTAGACCTTATGATACAGACTTGCTTCCTCCCGGGTGGTTAGACTGCCCACCACATGGTCAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAGTCTTTCAATGATTACATTCCACGTCAAAAATATACTCCCCAGCAAGCAATTCTTCAACAACGAGTTTTGGGTAGAGAACTTGGTTTAGTGATTGATTTAACAAATACTAATCGTTACTATCCAGTGTCAGACTGGACAAGAGAAGGTGTTCGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCTGTACCTGATAATGAATCTGTAAAAATGTTTTGTGACGAGGTTCTTGATTTTCGCTCTCAAAGAACCGACACAGAGAAATATATACTTGTACATTGCACACATGGGCACAATCGCACAGGTTATATGATTGTTCATTTTCTTGTGCGTACAGAATCAATTTCTGTCACCGAGGCAATAAATAAATTTGCTAGGGCACGCCACCCAGGAATTTACAAGCAGGACTACATCGACAACCTATACATGTTTTATCGTGAAAAGAAGCCTGAAGATCTTGTATGTCCTCAAACTCCAGAATGGAAGAGATTTTCTAACCCTGATTTTCATGGTGTGGCTGTTCCTTCTGTTGACAATAATGGAGATATTCCTCAGCAGAAGAATATCGTGAGGAATGAATTATTGACAAATGATGATGTTTTGGGAGATCCAATTCCTCCAAACCAGCTGTATAAAATGCAAGAACTTTGTTACCAACTGCTCAAGTTGGGCACAAAGGGAAGAGGACATCAAATGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGATAATCTGCAACTCTTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGAACACGATATATGATGATGATTACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCTTTTTAGAAGAATTGATATGCGTTTTCCTTGCAGATACTCCAATGGGGATACACCTGAGAGGAATCATCACTACACATTACTTGATGGGGAGATGATTATTGACTTGGATCCACAAACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATAGCAATAAATCAAGTCTCTTTGACAGAGCTGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGACTCTCTCCAAGAGTATAAATCCTCATTACAGATATGACCTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTCCTATCTACTGTGTCAAAGCTCCTTGATAAATTCATTCCACAACTCTCACATTCAGCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGAACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTGTGTGAGGTTGGAGCTGGAAATCGTCCCCTGCTCTTTCTGTTTGAACGTGGGGTGAAGAAGTTAATGGAAGGGAGTAGTGTTATCCTTCAAGGTGATGCTTCAGATATTTCTTCCTATTCAGGGAGAATCATTGAGTGCTCATGGGATCCTGTAGAGCATCATTGGATTTGTATGCGGGTCAGAATTGACAAAGCAACCCCAAATGATATCAATACCTACAGAAAGGTAATGCGAAGCATAAGGGATAACATTACACAAGATGTGCTGTTGAACGAGATCAATGAGATCATTAGCCTACCTTTGTATGCAGACAGAATACAAAGAGATATCAAGGCTCACCAGCATATGCTTTCATCACGACGCAAGTGA	1914	0.4054	MSSYHHMNREERHRGIKRKPPDFDRRHQHGSNNLNSRPYDTDLLPPGWLDCPPHGQELGCIIPSKVPLGESFNDYIPRQKYTPQQAILQQRVLGRELGLVIDLTNTNRYYPVSDWTREGVRHVKIRCKGRDSVPDNESVKMFCDEVLDFRSQRTDTEKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFARARHPGIYKQDYIDNLYMFYREKKPEDLVCPQTPEWKRFSNPDFHGVAVPSVDNNGDIPQQKNIVRNELLTNDDVLGDPIPPNQLYKMQELCYQLLKLGTKGRGHQMFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMMITGDGCYLIDRKFLFRRIDMRFPCRYSNGDTPERNHHYTLLDGEMIIDLDPQTHKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMERETLSKSINPHYRYDLEPFSVRRKGFWFLSTVSKLLDKFIPQLSHSADGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGNRPLLFLFERGVKKLMEGSSVILQGDASDISSYSGRIIECSWDPVEHHWICMRVRIDKATPNDINTYRKVMRSIRDNITQDVLLNEINEIISLPLYADRIQRDIKAHQHMLSSRRK	637

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal20g0005	637	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	140	209	IPR000387	GO:0016311\|GO:0016791
	Lal20g0005	637	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	44	232	IPR029021	-
	Lal20g0005	637	Pfam	Dual specificity phosphatase, catalytic domain	96	216	IPR000340	GO:0008138\|GO:0016311
	Lal20g0005	637	SUPERFAMILY	Nucleic acid-binding proteins	508	622	IPR012340	-
	Lal20g0005	637	MobiDBLite	consensus disorder prediction	1	31	-	-
	Lal20g0005	637	CDD	RNA_5'-triphosphatase	47	213	-	-
	Lal20g0005	637	ProSitePatterns	Tyrosine specific protein phosphatases active site.	162	172	IPR016130	GO:0016311\|GO:0016791
	Lal20g0005	637	SMART	dsp_5	77	217	IPR020422	GO:0006470\|GO:0008138
	Lal20g0005	637	CDD	Adenylation_mRNA_capping	278	506	IPR001339	GO:0004484\|GO:0005524\|GO:0006370
	Lal20g0005	637	SUPERFAMILY	DNA ligase/mRNA capping enzyme, catalytic domain	292	506	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal20g0005	Lal-Chr20	51665	59674	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal20g0005	33	627	Protein tyrosine phosphatase (PTP) family	AT3G09100	61.028	0.0	756

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal20g0005	K13917		-	gmx:100778292	1112.83

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