Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2338 ATGGATGCTTGTGCTATGCTCAGCGGTGGCAGCAATAATAACATTGAAGATGGCAGCAACAACAACAACATTAATGGGGGTAGTCCTTTGACTAGTGCTTCTAATAACTCTAGTAATATCAGCAGTGAAGAGCACACTCACACTCAGCAGCTCCAGCATTCCCATTCTGGAAAAAGGAAAATGGTGAGAAAGAGGATGGCTTCTGAGATGGAACCAACTCATACTATGTTGCCACATGGTGCTATCGATAGTAGGTTTCCTCGTCGAAGCAGCAGCAACAACAACAACATGTCATCAGTACTAATTTGCTCTTCTTTACCTCCAGCTGTAGAAAAAACAACTAGTTTTAATAACTACTACCATTATAAAACTAGTTCTTCTTCAAGAGTAGATAATAACGCCCATGTTGTTCCAAACCCCACTACTCCCAACTACTCCACTTTGCTACTACCTTCTTCTTCTACAACTATTAATCCCAACTATAACATTATTCAGACGCAGCAGCAAGATCAGAACCAACTTACATCACCTGCAGTGTGTGGATTCTCGGGTTTGCCCCTTTTTCCTGCATCTCAGCAACGAAATCATCATCACAATAGTACTAGTACCGGTGCTACTGTTGAGGTTGCTGCTTCTCCTTCCATGGAAGACAATAACAACAACAACAACTCAGCAGCCACTGATTGGATTGATGGTATATTGAAGGATCTTATCCATAGCTCCAACAGTGTTTCCATTCCTCAACTCATCAGCAACGTTAGAGAGATTATATACCCTTGCAACCCCAACCTCGCTGTTGTTCTTGAATACAGGCTGCGTCTTCTCACCTCTCATGACAACACCTCTACTGCTCCAAACAACAACAACAACAACAACAACTCATCTAACCCTGCATCAGTTAGAAAAAACAATACAATCGAAGTGGGAGAGGGTTTGAACCAAAATCAGAGGCCCTTACCCTCAGGAGCTAATAATGTTATGCATGATAATTTCCCACCAGATTCTTCATCAGGTGCTGCTCCTGTAGTTATGAATCAGATGTTGTCCAATTGGGGTGTGCTTCCAATTACCCATGGCGGAAATTCTTCGATGTCTGCTACTGATTTACCAACTCATCATGAAGAGGAATGTTGTGATATTGCTGCTAATGAAGCAGACACAACAAGAAAGAAGAAAGAAGAGATGCAGGGACAGAAGAAAGACGAAGAGGGGTTGCACCTCCTCAGTTTGCTGCTTCAATGTGCAGAAGCAGTATCAGCTGAGAATGTTGAAGATGCCAACAAGATGCTCCTTGAGATTTCCCAGCTATCAACACCATTCGGCACATCAGCGCAGCGAGTGGCAGCTTATTTCTCAGAAGCAATATCAGCAAGGCTAGTGAGTTCGTGTTTGGGAATATATGCGACCTTTCCTTCAACGGTAGTGTCTCACAAGGTAGCATCAGCATACCAAGTGTTCAACGGGATCAGTCCATTCGTGAAATTCTCACACTTCACAGCCAACCAGGCAATACAGGAAGCATTTGAGAGAGAGGAGAGGGTACACATAATAGATCTAGACATAATGCAAGGGTTGCAATGGCCAGGACTGTTTCACATACTGGCTTCAAGACCTGGTGGGCCCCCTTATGTTAGACTCACTGGTCTTGGCACTTCAATGGAGGCACTTGAGGCAACAGGTAACCGTTTGTCTGATTTTGCTAATAAACTTGGTCTTCCTTTTGAGTTCTCTCCTGTGCCTCATAAGGTTGGGAACCTTGATCTTGAGATACTCAATGTTAGTAAGACTGAAGCTGTTGCTGTCCATTGGTTGCAACATTCCCTCTACGATGTCACTGGCTCCGACACTAATACCTTGTGGCTTTTGCAGAGACTGGCACCTAAAGTGGTGACGGTGGTAGAGCAGGACCTGAGCAACGCAGGATCCTTCTTGGGAAGGTTTGTGGAAGCAATACATTACTACTCAGCGTTGTTTGATTCACTTGGGTGTAGCTATGGTGAAGAAAGTGAAGAGAGACATGTGGTGGAACAACAACTATTATCAAGAGAGATTCGTAATGTACTCGCAATTGGGGGCCCATCAAGGACCGGAGAGTTCAAGTTTCATAACTGGAGAGAAAAGCTTCAACAATGTGGGTTTAGAGGTATCTCACTATCTGGTAATGCTGCCACTCAAGCCAGCTTACTTCTTGGTATGTTTCCATCTGAGGGATATACCCTTGTGGAGGATAATGGAATTCTCAAACTTGGTTGGAAAGACCTTTGCTTGCTCACTGCTTCTGCTTGGAGACCTCCCTTCCACACCACTACCGCCATTCCTCATAGTTAA 2328 0.4412 MDACAMLSGGSNNNIEDGSNNNNINGGSPLTSASNNSSNISSEEHTHTQQLQHSHSGKRKMVRKRMASEMEPTHTMLPHGAIDSRFPRRSSSNNNNMSSVLICSSLPPAVEKTTSFNNYYHYKTSSSSRVDNNAHVVPNPTTPNYSTLLLPSSSTTINPNYNIIQTQQQDQNQLTSPAVCGFSGLPLFPASQQRNHHHNSTSTGATVEVAASPSMEDNNNNNNSAATDWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLAVVLEYRLRLLTSHDNTSTAPNNNNNNNNSSNPASVRKNNTIEVGEGLNQNQRPLPSGANNVMHDNFPPDSSSGAAPVVMNQMLSNWGVLPITHGGNSSMSATDLPTHHEEECCDIAANEADTTRKKKEEMQGQKKDEEGLHLLSLLLQCAEAVSAENVEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATFPSTVVSHKVASAYQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGNRLSDFANKLGLPFEFSPVPHKVGNLDLEILNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGCSYGEESEERHVVEQQLLSREIRNVLAIGGPSRTGEFKFHNWREKLQQCGFRGISLSGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTTTAIPHS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2338 775 MobiDBLite consensus disorder prediction 279 301 - -
Lal1g2338 775 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 145 765 IPR005202 -
Lal1g2338 775 PANTHER PROTEIN SCARECROW 145 765 - -
Lal1g2338 775 MobiDBLite consensus disorder prediction 7 47 - -
Lal1g2338 775 MobiDBLite consensus disorder prediction 1 65 - -
Lal1g2338 775 Pfam GRAS domain family 408 763 IPR005202 -
Lal1g2338 775 ProSiteProfiles GRAS family profile. 398 763 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2338 Lal-Chr1 25218242 25223340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2338 379 766 GRAS Transcription Factor Family AT5G41920 54.250 2.75e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lal1g2338 GRAS 4.5e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2338 - - lang:109325321 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2338 1 25218242 25223340 Lal1g2338 1 25218242 25223340 ECH
Lal2g1976 2 21935878 21938895 Lal1g2338 1 25218242 25223340 LSH
Lal9g1735 9 19550128 19553984 Lal1g2338 1 25218242 25223340 LSH