Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2304 ATGAGTTTCAGAGAAGGGAATGAATGTGAAGAATCAAAATCAGTGAGTCAAAATGGGTCACTTACAAATTCTCAGTTAACAGTTGATGAGAGTCTTCTGGTTGATCCCAAGTTATTGTTTATTGGCGATAAGATTGGTGAAGGAGCTCATGGCAAAGTTTATGAAGGAAGGTATCAAGACCAAATTGTTGCAATTAAAGTTCTGCATCGTGGGAGCACTTCAGAAGAAAGAGCTGCACTTGAAAATCGTTTTGCTCGGGAAGTTATTATGATGTCCCGTGTTCACCATGAGAATCTTGTTAAGTTTATTGGAGCTTGCAAGGATCCTCTTATGGTGATAGTTACTGAGCTATTACCAGGAATGTCACTGCGGAAATATTTAATGAGTATCCGTCCTAAACCATTAGAACTTCATGTGGCTATAAACTTTGCCCTTGATATTGCTAAAGCAATGGATTGGCTGCATGCCAACGGTATCATACACAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCAAATCAGAAGTCGGTTAAACTTGCAGATTTCGGTCTTGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTGACATTGCGGCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTGTATAGCTTTGGAATTGTTTTGTGGGAGTTACTAACAAACCGCATGCCTTTTGAAGGGATGTCTAATTTACAGGCTGCATATGCCGCCGCTTTTAAGCAAGAGAGGCCTAGCATTCCGGACGATATATCTCCCGATCTCACGTTTATCATACAATCATGCTGGGTTGAAGAACCCAACATGAGACCAAGCTTTAGTCAGATCATCCGCATGCTCAATGCGTTTCTCTTCACACTATCTCCTCCTTTGCCATCAGAAGAAGCAGCAGTAACAACAACAACAGCATGTAATGGTGCTATTACCGAGTTTTCTGGCCGAAACAAAGGAAAGTTTGCTTTTCTACGCCATCTGTTTTCTTCAAAGAGGACCAAGAACTAG 1062 0.4153 MSFREGNECEESKSVSQNGSLTNSQLTVDESLLVDPKLLFIGDKIGEGAHGKVYEGRYQDQIVAIKVLHRGSTSEERAALENRFAREVIMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKPLELHVAINFALDIAKAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPDDISPDLTFIIQSCWVEEPNMRPSFSQIIRMLNAFLFTLSPPLPSEEAAVTTTTACNGAITEFSGRNKGKFAFLRHLFSSKRTKN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2304 353 ProSitePatterns Protein kinases ATP-binding region signature. 45 66 IPR017441 GO:0005524
Lal1g2304 353 Gene3D Transferase(Phosphotransferase) domain 1 121 325 - -
Lal1g2304 353 ProSiteProfiles Protein kinase domain profile. 39 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2304 353 PRINTS Tyrosine kinase catalytic domain signature 115 128 IPR001245 GO:0004672|GO:0006468
Lal1g2304 353 PRINTS Tyrosine kinase catalytic domain signature 153 171 IPR001245 GO:0004672|GO:0006468
Lal1g2304 353 PRINTS Tyrosine kinase catalytic domain signature 227 249 IPR001245 GO:0004672|GO:0006468
Lal1g2304 353 PRINTS Tyrosine kinase catalytic domain signature 271 293 IPR001245 GO:0004672|GO:0006468
Lal1g2304 353 PANTHER SERINE-THREONINE PROTEIN KINASE 3 324 - -
Lal1g2304 353 Gene3D Phosphorylase Kinase; domain 1 27 118 - -
Lal1g2304 353 MobiDBLite consensus disorder prediction 1 21 - -
Lal1g2304 353 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 3 324 - -
Lal1g2304 353 CDD STKc_MAP3K-like 45 300 - -
Lal1g2304 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Lal1g2304 353 Pfam Protein tyrosine and serine/threonine kinase 41 300 IPR001245 GO:0004672|GO:0006468
Lal1g2304 353 SUPERFAMILY Protein kinase-like (PK-like) 37 315 IPR011009 -
Lal1g2304 353 SMART serkin_6 39 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2304 Lal-Chr1 24967956 24972592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2304 23 353 MAP Kinase Kinase Kinase AT5G01850 73.239 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal1g2304 PK_Tyr_Ser-Thr 1.2e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2304 - - jre:109021493 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2304 1 24967956 24972592 Lal1g2304 1 24967956 24972592 ECH
Lal2g1960 2 21854625 21861762 Lal1g2304 1 24967956 24972592 LSH