Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2301 ATGAGAAAGGATTTAGAGAACAACACCCTAAGAGGAGAAGAAACAGAAACAGAAACAGAAACCATTTCATCCATGTCAAAGAACAGTGCCATTTTGTTCGGGAAATACAAGATTCACAAGTTGTTAGGAATTGGAGCATCCGCAAAGGTTTACCATGCTACAAACATAGACACAGGGAAGAGTGTAGCTATTAAGGTTGTCAACAAACACAAGGCTATGAAGAGTGGTTTCAACACCAACATTGAACGTGAAATCTCTATCATGCACAAACTTCATCACCACCCAAATATAGTAAAGATCTTTGAAGTCCTTGCAACCAAGACAAAGATTTACATTGTCATGGAATTTGTCTCCGGTGGTGAAATCTTTCAAGAGGTATCAACTAAAGGACATCTCAGTGAAGATCTCAGTAGAAAATATTTCCGGCAACTTATCTCCGCCGTGAAGTATTGCCACTCCAATGGTGTCTTCCACCGTGATCTTAAACTTGACAACCTCTTAATCGATGAGAATAAAGATCTAAAGGTTAGTGATTTTGGTTTGAGTGCTGTTAAGGATTCAACTCAACTCAACAATGATGCGTTGCTTAAAACTGTTTGTGGAACACCTGCTTATGTTGCACCAGAGATTCTCTCAAAGAAAGGTTATGATGGAGCTAAGGTTGATGTTTGGTCTTGTGGTGTTGTTTTGTTTGCTCTTTCTGTTGGGTATTTACCATTCAATGATTATAATATTACTGTCTTGTATAGAAAGATTTATAGAGGCCAATTTCGTTTACCAAAAGGGTTGTTATCTCATGGTTTGAGAAATATCATATCAAGAATGTTGGATACAAATCCTCAAACAAGGATTACCATTGATGAGATTCTACAAGATGCATGGTTCAAAGATGGTGAATGTAAACCTAAACCTGATATGGGTATGTCTACAAAGCATGATGAGTGGGAGAAAATCACAAACAAGTGTTTAAATGCATTTGATTTGATATCATTTTCAAGTGGGTTAGACTTGTCAAGTTTGGTAGTAAATTCTAATGTTATGGATCAAATGGAGAGAATGATTTTGAGAGAAACATGTGAGAAGGTAATGGAGAAGGTGGAGGATGTGGCTAAGAGAAGAAGGGTAACAATTACAAAGAAGAAGAATGATTTTGTAGCAAAGTTGGATGGGCAAGATGGTAATTTTGTGGCCTATGTTGTGTGTTATCAGTTAACTGATGAGTTATTAGTAGTTGAGTTAAAGAGGAAGGAAAAACAAAAGGGAAGTAGTTCACAATTTTGGAAGGATTTAAGATCCCAAATTATTGAGTTCACTTTATAA 1320 0.3652 MRKDLENNTLRGEETETETETISSMSKNSAILFGKYKIHKLLGIGASAKVYHATNIDTGKSVAIKVVNKHKAMKSGFNTNIEREISIMHKLHHHPNIVKIFEVLATKTKIYIVMEFVSGGEIFQEVSTKGHLSEDLSRKYFRQLISAVKYCHSNGVFHRDLKLDNLLIDENKDLKVSDFGLSAVKDSTQLNNDALLKTVCGTPAYVAPEILSKKGYDGAKVDVWSCGVVLFALSVGYLPFNDYNITVLYRKIYRGQFRLPKGLLSHGLRNIISRMLDTNPQTRITIDEILQDAWFKDGECKPKPDMGMSTKHDEWEKITNKCLNAFDLISFSSGLDLSSLVVNSNVMDQMERMILRETCEKVMEKVEDVAKRRRVTITKKKNDFVAKLDGQDGNFVAYVVCYQLTDELLVVELKRKEKQKGSSSQFWKDLRSQIIEFTL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2301 439 Pfam NAF domain 322 379 IPR004041 GO:0007165
Lal1g2301 439 ProSiteProfiles Protein kinase domain profile. 36 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2301 439 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
Lal1g2301 439 PANTHER - 17 430 - -
Lal1g2301 439 MobiDBLite consensus disorder prediction 1 20 - -
Lal1g2301 439 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 17 430 - -
Lal1g2301 439 CDD CIPK_C 324 430 - -
Lal1g2301 439 SMART serkin_6 36 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2301 439 Pfam Protein kinase domain 36 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2301 439 MobiDBLite consensus disorder prediction 1 21 - -
Lal1g2301 439 Gene3D Transferase(Phosphotransferase) domain 1 119 321 - -
Lal1g2301 439 SUPERFAMILY Protein kinase-like (PK-like) 32 304 IPR011009 -
Lal1g2301 439 Gene3D Kinase associated domain 1, KA1 322 438 - -
Lal1g2301 439 Gene3D Phosphorylase Kinase; domain 1 20 118 - -
Lal1g2301 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Lal1g2301 439 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2301 Lal-Chr1 24926631 24927950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2301 17 435 CBL-interacting serine-threonine protein kinases AT2G30360 52.103 2.95e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal1g2301 Pkinase 1.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2301 - K12761 gmx:100788245 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2301 1 24926631 24927950 Lal1g2301 1 24926631 24927950 ECH
Lal1g2301 1 24926631 24927950 Lal14g0790 14 9840179 9841848 PCT