Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2295 ATGCAACCAAGGACAAGTATTGGAGACGGTTTTCGTGTTAGTGTGTCAAGTGCACATAGCACTTCAAGTGCAGGATCAGGACCAGATGACATAGAGTCACTAGGTGATGTTTATGTATGGGGAGAAGTTTGGTCGGACGGTGTTTCACCCGAAGGTTATGGGACTCAAGTCCCTTCGACAACTGATGTGCTCGTTCCTAAGCCCTTAGAATCAACTGTTGTTCTTGATGTTCAACAGATTGCATCCGGTGTGCGCCACATTGCTTTAGTCACAAGGCAAGGAGAGGTTTTCACTTGGGGGAAGGAATCTGGTGGTAGACTCGGTCATGGAACCGATAAAGATTTTGGCCACCCTCATCTCGTTGAGTTTCTTGCGGTTACTAATGTGGATTTTGTTGCATGTGGAGAGAATCATACATGTGCGGTGTCTACATCGGATGATGTTTTCTCATGGGGCGACGGTGCATACAATGTTGGACTTTTAGGCCATGGCACCGAGGTTAGCCACTGGATACCAAAGAGGGTATGTGGTCCTTTGGAAGGAATCCAAGTTATATCTATTGCATGTGGCACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTCACCTTTGGTGATGGAACATTTGGTGCTTTGGGTCATGGAGATAGAGAGAGTGTGACATATCCAAAAGAGGTACAATTACTAACTGGATTGAAGACTATTAAGGTTGCTTGTGGTGTATGGCACACTGCAGCTATAGTAGAGGTTATGTTTCAATCTGGTTCTAATGTTTCATCAAGGAAACTTTTCACTTGGGGCGACGGCGAAAAGTATCGGTTAGGACATGGAAACAAGGAAACATATCTTCAACCAACATGTGTCCCAGCGCTTATTGAATATAACTTCAACCAGATAGCGTGTGGACACACTATGACTCTTGCATTAACTACATCTGGCCATATATTTACTATGGGAGGCGCCGAAAATGGTCAACTAGGAAATCCTTTGTCCGATGGAAAAGTACCTCTCTTAGTACAAGATAAGTTAGTAGGCGAGTTTGTTGAGGAAGTATCATGTGGTGCTAATCATGTTGCAGTGTTGACATCAAGAAGTGAACTATACACTTGGGGGAAAGGTGCTAATGGAAGATTAGGACACGGCGACATAGAGGATCGAAAAACACCAACCTTGGTGGAAGCCTTGAAAGAAAGGCTCGTGAAAAACATATCATGTGGCTCAAACTTCACATCTTGCATATGCTTACATAAATGGGTCTCTGGAGTGGACCAATCTGTATGCTCGGGTTGTAGACAACCATTCGGTTTTACTCGAAAAAGACACAATTGTTATAACTGTGGATTGGTGCATTGCCATGCTTGTAGCTCAAGAAAGGCGATGAAAGCAGCGTTGGCTCCAACGCCAGGAAAACCTCATCGTGTGTGTGACTCTTGTTATTCTAAGCTTAAAGCCGTCGAGGCTGCAGTTTCAGCCAGTGTTAATAAAAGAGTTGCTACTTCAACTCACCAATTGATAGATGGAAGGGAAAGATTAGTCCATGGAGAAGTAAGGTCTTCAAGACTCTTATCTCCTATGATGATGGAACCTATGAAATTCCTTGATACAAGGAACAATAAGCTCGGAAACACATACGATTATTCTTCTTCCATGTCGCGAGCTTCGCAACTTCCATCGACTTTGCAATTGAAAGATGTTACATTTCCAAGTTCGTTGGGTTCCATCCAAAATGTTTTGAGGCCAACTATAACTCCAAGTCCATCACAAACTCCACCTTCAATTTCACGACCGGCTTCACCATACGTAAGAAGGCCTAGCCCGTCGCGATCGGTAAATCCTGGATTTTCTAGAAGTGTCATTGACACTTGTAGGAAGACAAATGAGCTTTTGAACCAGGAAGCCTCAAAATTGCAGAACCAAATTAAAAGTTTGAAGCAGAAAAGTGATATGAAAGATGTGGACATTCAGAAGCTTCATAAAAACATTAAGGAAGCTGCATTATTGGCTGCAGAGCATTCTTCTAAGCATATAGCACTCAAAGAATATTTTGTGCCTATCATAGAACAGTTGAAGGACATAACTCAGAAGCTGCCACCAGAGATTCTAGACAATGAAAATATGAGAACTATGGTTACTAAAGCAGAAGATTTTTTCAAAGAAAATTCAGAAGATGAAAAAACATCATCAAACATAGAACATGAGCAACAAAATGAAACTAAAACAACAACATCATCAACTACTGATTCTTCTAAACTTGAAGAACAAAGAATAGAAGAAAACAATGAAGAAGATATTACAAGAGTTGTTGACCCTTCAATTCAAGATGATGGAAATGCCCTTAAAGAAAGCAATAATATATCATCATTATCAGAGAATTCACAAAGCACTGAAAATGAATCCAAATCTTTTGTAGAAGTACAAGTCATTGAAAAATTTGAACCTGGTGTTTATGTCACACTTATAGTAAAATCTGGTGGTATCAAAGTTTTCAACAGAGTTAGATTCAGTAAGAGAAAATTCCAAGAGCATGAAGCAGAAGAATGGTGGAGCAAAAACAGAGAAAGGGTACTTAAGAAATATAGTACTCCACATGCTACAAATCAAGTAGCTACTAACACCTTACCACCACCATAG 2637 0.4073 MQPRTSIGDGFRVSVSSAHSTSSAGSGPDDIESLGDVYVWGEVWSDGVSPEGYGTQVPSTTDVLVPKPLESTVVLDVQQIASGVRHIALVTRQGEVFTWGKESGGRLGHGTDKDFGHPHLVEFLAVTNVDFVACGENHTCAVSTSDDVFSWGDGAYNVGLLGHGTEVSHWIPKRVCGPLEGIQVISIACGTWHSALATSNGKLFTFGDGTFGALGHGDRESVTYPKEVQLLTGLKTIKVACGVWHTAAIVEVMFQSGSNVSSRKLFTWGDGEKYRLGHGNKETYLQPTCVPALIEYNFNQIACGHTMTLALTTSGHIFTMGGAENGQLGNPLSDGKVPLLVQDKLVGEFVEEVSCGANHVAVLTSRSELYTWGKGANGRLGHGDIEDRKTPTLVEALKERLVKNISCGSNFTSCICLHKWVSGVDQSVCSGCRQPFGFTRKRHNCYNCGLVHCHACSSRKAMKAALAPTPGKPHRVCDSCYSKLKAVEAAVSASVNKRVATSTHQLIDGRERLVHGEVRSSRLLSPMMMEPMKFLDTRNNKLGNTYDYSSSMSRASQLPSTLQLKDVTFPSSLGSIQNVLRPTITPSPSQTPPSISRPASPYVRRPSPSRSVNPGFSRSVIDTCRKTNELLNQEASKLQNQIKSLKQKSDMKDVDIQKLHKNIKEAALLAAEHSSKHIALKEYFVPIIEQLKDITQKLPPEILDNENMRTMVTKAEDFFKENSEDEKTSSNIEHEQQNETKTTTSSTTDSSKLEEQRIEENNEEDITRVVDPSIQDDGNALKESNNISSLSENSQSTENESKSFVEVQVIEKFEPGVYVTLIVKSGGIKVFNRVRFSKRKFQEHEAEEWWSKNRERVLKKYSTPHATNQVATNTLPPP 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2295 878 MobiDBLite consensus disorder prediction 721 800 - -
Lal1g2295 878 MobiDBLite consensus disorder prediction 778 800 - -
Lal1g2295 878 MobiDBLite consensus disorder prediction 580 618 - -
Lal1g2295 878 MobiDBLite consensus disorder prediction 1 28 - -
Lal1g2295 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Lal1g2295 878 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Lal1g2295 878 ProSiteProfiles BRX domain profile. 807 862 IPR013591 -
Lal1g2295 878 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Lal1g2295 878 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Lal1g2295 878 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 2 865 - -
Lal1g2295 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 495 IPR013083 -
Lal1g2295 878 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Lal1g2295 878 Pfam Regulator of chromosome condensation (RCC1) repeat 94 142 IPR000408 -
Lal1g2295 878 Pfam Regulator of chromosome condensation (RCC1) repeat 368 415 IPR000408 -
Lal1g2295 878 Pfam Regulator of chromosome condensation (RCC1) repeat 265 311 IPR000408 -
Lal1g2295 878 Pfam Regulator of chromosome condensation (RCC1) repeat 146 196 IPR000408 -
Lal1g2295 878 Pfam Regulator of chromosome condensation (RCC1) repeat 200 249 IPR000408 -
Lal1g2295 878 SMART fyve_4 417 486 IPR000306 GO:0046872
Lal1g2295 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Lal1g2295 878 Pfam FYVE zinc finger 419 485 IPR000306 GO:0046872
Lal1g2295 878 MobiDBLite consensus disorder prediction 1 30 - -
Lal1g2295 878 Pfam Transcription factor regulating root and shoot growth via Pin3 808 861 IPR013591 -
Lal1g2295 878 Gene3D - 258 424 IPR009091 -
Lal1g2295 878 Gene3D - 10 156 IPR009091 -
Lal1g2295 878 Gene3D - 157 257 IPR009091 -
Lal1g2295 878 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 2 865 - -
Lal1g2295 878 SUPERFAMILY FYVE/PHD zinc finger 419 491 IPR011011 -
Lal1g2295 878 MobiDBLite consensus disorder prediction 735 751 - -
Lal1g2295 878 MobiDBLite consensus disorder prediction 752 771 - -
Lal1g2295 878 CDD FYVE_scVPS27p_like 427 481 - -
Lal1g2295 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Lal1g2295 878 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Lal1g2295 878 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Lal1g2295 878 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Lal1g2295 878 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Lal1g2295 878 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Lal1g2295 878 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Lal1g2295 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 93 IPR000408 -
Lal1g2295 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Lal1g2295 878 Coils Coil 621 648 - -
Lal1g2295 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Lal1g2295 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Lal1g2295 878 SUPERFAMILY RCC1/BLIP-II 34 420 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2295 Lal-Chr1 24858004 24861815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2295 778 861 Major Intrinsic Protein MIP AT1G31880 35.714 3.22e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2295 - - gmx:100779684 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1956 2 21832316 21836925 Lal1g2295 1 24858004 24861815 LSH