Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2255 ATGAAGACTGATTCTGCTTCAGGATATAAGAAATCGCGCAAGAGACGCGGTGGTGGAAATGGCTCAGTAGAAGACACACTTGAGAAATGGAAGAATTATAACAAGCAAAAGCAACTTGGATCTGAAGATAATGGTGTGAAAACATTGATTCACAAAGTTGCTGCAAAAGGGTCTAAAAAGGGTTGCATGAGAGGTAAAGGTGGACCTGAGAATTCATATTGCAACTTCAGAGGTGTGAGGCAAAGGATTTGGTGTAAATGGGTTGCTGAAATCAGGGAACCTATCCATGTTGGTAAGAAACCAAATAGGCTTTGGCTTGGTACTTTCACTACTGCAAATGATGCTGCTCTTGCATATGATGAAGCAGCTAAGGTCATGTATGGTCGTTGCGCCCGTTTGAATTTCCCCAATTGTTCTAATGTTGAGTCAATAGCCTCTGATGAATCATCATCATCATCATCTAGTGCATGTGATGATAAATCTCATAGTGGTTCTTCAGATGCTTTGAATGATGATGAACTTGCAAAAATTGAAGACATACCCATATCTTCTGAGGTTGGTGTTTTTGAGGAAAATGAGGAAAAACAAGTTCTTGTCCAGTATCAAACAAATAAGAAATTCAAGACAAGAATTCATCAAGGGTCTTCCAAGAACTTTAAGGTTGAATCAGAGGAGGTTTTGAAAAATTCTGGCATAGTTGGAGAGGATAATCACATGGAGAAGGAAACTATGAATATGATCATGAACATAAGAGCTGATTGTAGCAGTTCTGGAACTAATGAACAGTTTGCAGACTATGAAGTTGATAATGATTACAGTTTCTTAAGTCCTGACTATGATTTTGGCTTATTGGAAGATAAGAATTTTGAGTGGAGAAAAGAGCCGAAAAGAAGTAGCATAAATTTTAAAGCTCAGATGCCACTAATGGATATTGCATTTCCAGATATGAGCCCGAGAAGTGGATCCATTACTTGTTTTGCTGATGATACCCTTTCCAAAATATTCAGCGATGACAGAAAACCCATCTTTGGAGTTCTTCACTTGCTGGAAAAACCTGTCCTGATCCTTAGAATTTTGCTCCAAATTTCTTTTCATTTCTATGACGGACCTATATTCAGGAGCGCACTCGGGGCATTCTTTTTCACTGTCACCAAGGCAGCGCAAATGGAATGA 1173 0.3887 MKTDSASGYKKSRKRRGGGNGSVEDTLEKWKNYNKQKQLGSEDNGVKTLIHKVAAKGSKKGCMRGKGGPENSYCNFRGVRQRIWCKWVAEIREPIHVGKKPNRLWLGTFTTANDAALAYDEAAKVMYGRCARLNFPNCSNVESIASDESSSSSSSACDDKSHSGSSDALNDDELAKIEDIPISSEVGVFEENEEKQVLVQYQTNKKFKTRIHQGSSKNFKVESEEVLKNSGIVGEDNHMEKETMNMIMNIRADCSSSGTNEQFADYEVDNDYSFLSPDYDFGLLEDKNFEWRKEPKRSSINFKAQMPLMDIAFPDMSPRSGSITCFADDTLSKIFSDDRKPIFGVLHLLEKPVLILRILLQISFHFYDGPIFRSALGAFFFTVTKAAQME 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2255 390 CDD AP2 74 137 IPR001471 GO:0003700|GO:0006355
Lal1g2255 390 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 262 - -
Lal1g2255 390 MobiDBLite consensus disorder prediction 144 170 - -
Lal1g2255 390 SUPERFAMILY DNA-binding domain 75 136 IPR016177 GO:0003677
Lal1g2255 390 MobiDBLite consensus disorder prediction 1 27 - -
Lal1g2255 390 Pfam AP2 domain 74 128 IPR001471 GO:0003700|GO:0006355
Lal1g2255 390 MobiDBLite consensus disorder prediction 144 163 - -
Lal1g2255 390 Gene3D AP2/ERF domain 75 137 IPR036955 GO:0003700|GO:0006355
Lal1g2255 390 ProSiteProfiles AP2/ERF domain profile. 75 136 IPR001471 GO:0003700|GO:0006355
Lal1g2255 390 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Lal1g2255 390 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Lal1g2255 390 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 262 - -
Lal1g2255 390 SMART rav1_2 75 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2255 Lal-Chr1 24522266 24524344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2255 1 187 AP2-EREBP Transcription Factor Family AT2G40340 48.168 1.40e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal1g2255 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2255 - - lang:109361039 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1696 9 19256791 19258002 Lal1g2255 1 24522266 24524344 LSH