Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2249 ATGGCTACTCCAACAGCATATCTTCCAAGTGCAGGGTCACCAGAATGGTTAAACAAAGGAGACAACTCATGGCAAATGATAGCAGCTACACTTGTTGGTCTTCAAAGCATGCCAGGTCTTGTGATCTTATATGCAAGCATAGTTAAGAAAAAATGGGCAGTGAATTCAGCTTTCATGGCTCTATATGCCTTTGCAGCTGTTCTTATATGTTGGGTACTTGTAGGTTATAGAATGGCCTTTGGAGATAAACTCTTACCCTTTTGGGGTAAAGGTGCTCCTTCATTAGGTCAAAAGTTTCTCATACAAAGAGCTAAAGTACCTGAAACTACTCATTATTATAAAAATGGTACAATTGAGAATAAAGCTGAAGAACCCTTTTTTCCTATGGCTTCACTTGTTTATTTTCAATTCACTTTTGCTGCTATTACTGTTATTTTGTTAGCTGGGTCTGTACTTGGTAGAATGAATATTAAGGCTTGGATGGCTTTTGTGCCTCTTTGGCTTATCTTTTCTTACACTGTTGGTGCCTTTAGTTTATGGGGTGGTGGCTTTCTTTACCAGTGGGGTGTTATTGATTATTCTGGTGGCTATGTTATTCATCTCTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGTTGAAGAGTGATAGGGAGAGATTTCCACCAAACAATGTGCTTCTGATGCTAGCAGGTGCTGGGTTACTATGGATGGGTTGGTCAGGGTTTAATGGTGGAGCACCATATGCATCAAATTTGGTGTCTTCAATTGCTGTTTTGAACACTAACATTTGTGCAGCCACTAGCCTCCTTGTATGGACATGTCTCGACGTCGCCTTCTTCGGGAAACCGTCGGTCATCGGAGCTGTTCAGGGCATGATGACTGGACTTGTATGCATTACCCCTGGTGCAGGTATTGTGCAATCATGGGCGGCTATAGTGATGGGAATACTATCAGGAAGCATTCCTTGGGTCTCTATGATGATTCTTCACAAAAAGTCAAGTTTTTTGCAAAAGGTAGATGATACCTTTGGTGTATTTCACACACATGCTGTGGCTGGGCTTTTGGGTGGGCTTCTCACAGGCCTATTAGCAGAACCAGCCCTTTGTAGACTCCAATTACCAGTTACTAACTCAAGAGGTGCATTCTATGGTGGAAATGGTGCCATGCAATTTCTTAAGCAATTAGTGGCAGCATTTTTTGTTATTGGATGGAACTTGGTATCCACCACCATTATTCTCCTTTTCATACAATTGTTCATACCATTAAGGATGTCCGACGAGCAACTAGAGATCGGCGACGATGCAGTTCATGGCGAGGAAGCTTATGCCCTTTGGGGTGATGGAGAGAAGTATGACCCGACTAGACATGGTTCCTTAACCACGGGTCATTCTTCATCACCTTATGTTAATGGTGCTAGAGGTCTGACCATGAATTTATAA 1455 0.4241 MATPTAYLPSAGSPEWLNKGDNSWQMIAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGDKLLPFWGKGAPSLGQKFLIQRAKVPETTHYYKNGTIENKAEEPFFPMASLVYFQFTFAAITVILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYASNLVSSIAVLNTNICAATSLLVWTCLDVAFFGKPSVIGAVQGMMTGLVCITPGAGIVQSWAAIVMGILSGSIPWVSMMILHKKSSFLQKVDDTFGVFHTHAVAGLLGGLLTGLLAEPALCRLQLPVTNSRGAFYGGNGAMQFLKQLVAAFFVIGWNLVSTTIILLFIQLFIPLRMSDEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGSLTTGHSSSPYVNGARGLTMNL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2249 484 PANTHER AMMONIUM TRANSPORTER MEP2 1 481 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lal1g2249 484 TIGRFAM amt: ammonium transporter 21 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lal1g2249 484 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lal1g2249 484 Pfam Ammonium Transporter Family 24 447 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lal1g2249 484 SUPERFAMILY Ammonium transporter 16 429 - -
Lal1g2249 484 PANTHER AMMONIUM TRANSPORTER 1 481 - -
Lal1g2249 484 Gene3D Ammonium transporter AmtB like domains 8 450 IPR029020 -
Lal1g2249 484 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005887
Lal1g2249 484 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005887
Lal1g2249 484 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005887
Lal1g2249 484 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005887
Lal1g2249 484 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2249 Lal-Chr1 24471815 24476397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2249 129 484 Inorganic Solute Cotransporters AT2G38290 76.454 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2249 K03320 - gmx:100790119 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2249 1 24471815 24476397 Lal1g2249 1 24471815 24476397 ECH
Lal9g1685 9 19119878 19123535 Lal1g2249 1 24471815 24476397 LSH