Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2247 ATGGAATACAACATTAATATTCCAAACCCTAGCTCAAAAGGGTTGAATAAAAACAAAAGAGTGAGGCTTTCAAATGATCCACAAAGTGTTGCAGCTAGAGAAAGAAGACATAGAATAAGTGACAGGTTCAAGATCCTTCAGAGTATGGTCCCTGGAGGGAGTAAAATGGACACAGTTTCTATGTTGGAAGAAGCCATTAACTATGTTAAGTTCCTCAAAACTCAGATTTGTTTTCACCAAACAATGATAGATTTTGTGGATAATGTTCATGATTCTTCACTCATTATGTTACCACCTCAAAAATATTTCCCTCATGAAGAAAATATCATTTCATTTCAGCAACAAAATTCTTCAATTTCAGTACCACAAATACCATTGGAGGAACAGTGTTGCTTCCAAGGTGAAGATAATAATACCATTGTCACCATTGATGATAATATGAAATATTGGTTAGCTTAG 459 0.3442 MEYNINIPNPSSKGLNKNKRVRLSNDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAINYVKFLKTQICFHQTMIDFVDNVHDSSLIMLPPQKYFPHEENIISFQQQNSSISVPQIPLEEQCCFQGEDNNTIVTIDDNMKYWLA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2247 152 CDD bHLH_AtIND_like 24 83 - -
Lal1g2247 152 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 16 138 - -
Lal1g2247 152 Gene3D - 17 81 IPR036638 GO:0046983
Lal1g2247 152 SMART finulus 29 78 IPR011598 GO:0046983
Lal1g2247 152 Pfam Helix-loop-helix DNA-binding domain 33 72 IPR011598 GO:0046983
Lal1g2247 152 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 86 IPR036638 GO:0046983
Lal1g2247 152 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 16 138 IPR045843 GO:0003700|GO:0006355
Lal1g2247 152 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 72 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2247 Lal-Chr1 24460037 24460495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2247 17 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 61.667 2.59e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g2247 HLH 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2247 - - gmx:113001230 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2247 1 24460037 24460495 Lal1g2247 1 24460037 24460495 ECH